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. 2014 Feb 26;9(2):e89788. doi: 10.1371/journal.pone.0089788

Table 4. MM/PBSA binding free energies (kJ/mol) of RIG1/dsRNA and MDA5/dsRNA complexes.

Energy component RIG1/dsRNA (kJ/mol) MDA5/dsRNA (kJ/mol)
ΔGcoul −23858.9 (6.0)* −26288.4 (5.1)
ΔGps 28789.7 (6.2) 32055.2 (5.6)
ΔGpolar 4930.8 5766.8
ΔGvdW −3431.18 (1.2) −3487.69 (1.8)
ΔGnps −96.0808 (0.3) −93.3481 (0.5)
ΔGnonpolar −3527.26 −3581.04
ΔGbind −1403.5 (3.7) −2185.78 (3.5)

*Standard errors are indicated in parenthesis.

ΔGcoul = Electrostatic energy.

ΔGps = Polar solvation energy.

ΔGpolar = Polar contribution (ΔGcoul+ΔGps).

ΔGvdW = van der Waals energy.

ΔGnps = Nonpolar solvation energy.

ΔGnonpolar = Nonpolar contribution (ΔGnps+ΔGvdW).

ΔGbind = Overall binding energy.