Table 4. MM/PBSA binding free energies (kJ/mol) of RIG1/dsRNA and MDA5/dsRNA complexes.
Energy component | RIG1/dsRNA (kJ/mol) | MDA5/dsRNA (kJ/mol) |
ΔGcoul | −23858.9 (6.0)* | −26288.4 (5.1) |
ΔGps | 28789.7 (6.2) | 32055.2 (5.6) |
ΔGpolar | 4930.8 | 5766.8 |
ΔGvdW | −3431.18 (1.2) | −3487.69 (1.8) |
ΔGnps | −96.0808 (0.3) | −93.3481 (0.5) |
ΔGnonpolar | −3527.26 | −3581.04 |
ΔGbind | −1403.5 (3.7) | −2185.78 (3.5) |
*Standard errors are indicated in parenthesis.
ΔGcoul = Electrostatic energy.
ΔGps = Polar solvation energy.
ΔGpolar = Polar contribution (ΔGcoul+ΔGps).
ΔGvdW = van der Waals energy.
ΔGnps = Nonpolar solvation energy.
ΔGnonpolar = Nonpolar contribution (ΔGnps+ΔGvdW).
ΔGbind = Overall binding energy.