Table 1.

Summary of ZDOCK and ZRANK performance for CARPI Rounds 13-19

			Prediction (ZDOCK)			Scoring (ZRANK)
Target	Complex	Typea	Classificationb	fnat c	iRMSD c	Classificationb	fnat c	iRMSD c
29	TRM8 / TRM82	U/B	Acceptable	49	2.131	Medium	69	1.120
30	Rnd1 / Plexin-B1	U/U	Incorrect	16	4.849	Incorrect	0	10.039
32	BASI / Subtilisin	U/U	Incorrect	25	5.505	Incorrect	1	9.453
33	Methyl transferase / RNA	H/H	Incorrect	10	16.212	Incorrect	1	19.537
34	Methyl transferase / RNA	H/B	Incorrect	27	4.997	Not participated
35	CBM22-1 / GH10	H/H	Incorrect	7	4.606	Incorrect	4	8.716
36	CBM22-1 / GH10	B/H	Acceptable	37	3.649	Not participated
37	LZ2 / ARF6	H/U	High	59	0.988	High	92	0.939
39	Centaurin-α1 / KIF13B FHA	U/B	Incorrect	0	15.639	Incorrect	0	15.643
40	Bovine Trypsin / APIA	U/U	Mediumd	92	1.007	Highd	86	0.433
			Highd	95	0.636	Incorrectd	0	19.879
41	Colicin E9 / IM2	U/U	Medium	46	1.728	Acceptable	63	2.45
42	TPR	H/H	Mediumd	100	1.199	N/A
			Incorrectd	15	4.135	N/A

^aU, B, and H denote unbound, bound, and homology modeling input structures, respectively.

^bBest classification of our 10 predictions, as assessed by the CAPRI evaluation team.

^cf_nat (%) and interface RMSD (iRMSD, Å) provided by the CAPRI evaluation team. In case of multiple predictions of the same classification, we report the prediction with the lowest interface RMSD.

^dResults are reported for the two distinct binding modes for targets 40 and 42.