Table 2.
Patterns of expression for genes, biological processes (BP) and metabolic pathways (MP)
|
Id |
Pattern |
Genes |
BP |
MP |
|||
|---|---|---|---|---|---|---|---|
| Number | % | Number | % | Number | % | ||
| 1 |
DDD |
51 |
0.15 |
1 |
0.11 |
2 |
1.32 |
| 2 |
DDS |
77 |
0.23 |
5 |
0.57 |
2 |
1.32 |
| 3 |
DDI |
11 |
0.03 |
6 |
0.69 |
4 |
2.63 |
| 4 |
DSD |
286 |
0.84 |
22 |
2.51 |
11 |
7.24 |
| 5 |
DSS |
537 |
1.58 |
31 |
3.54 |
4 |
2.63 |
| 6 |
DSI |
145 |
0.43 |
43 |
4.91 |
3 |
1.97 |
| 7 |
DID |
60 |
0.18 |
12 |
1.37 |
7 |
4.61 |
| 8 |
DIS |
64 |
0.19 |
5 |
0.57 |
2 |
1.32 |
| 9 |
DII |
88 |
0.26 |
18 |
2.06 |
1 |
0.66 |
| 10 |
SDD |
146 |
0.43 |
17 |
1.94 |
3 |
1.97 |
| 11 |
SDS |
224 |
0.66 |
13 |
1.49 |
0 |
0.00 |
| 12 |
SDI |
37 |
0.11 |
12 |
1.37 |
4 |
2.63 |
| 13 |
SSD |
1,290 |
3.79 |
92 |
10.51 |
26 |
17.11 |
| 14 |
SSS |
28,392 |
83.34 |
328 |
37.49 |
31 |
20.39 |
| 15 |
SSI |
882 |
2.59 |
100 |
11.43 |
16 |
10.53 |
| 16 |
SID |
299 |
0.88 |
17 |
1.94 |
3 |
1.97 |
| 17 |
SIS |
254 |
0.75 |
15 |
1.71 |
3 |
1.97 |
| 18 |
SII |
142 |
0.42 |
17 |
1.94 |
2 |
1.32 |
| 19 |
IDD |
136 |
0.40 |
11 |
1.26 |
4 |
2.63 |
| 20 |
IDS |
107 |
0.31 |
11 |
1.26 |
2 |
1.32 |
| 21 |
IDI |
38 |
0.11 |
17 |
1.94 |
1 |
0.66 |
| 22 |
ISD |
232 |
0.68 |
18 |
2.06 |
7 |
4.61 |
| 23 |
ISS |
307 |
0.90 |
16 |
1.83 |
3 |
1.97 |
| 24 |
ISI |
133 |
0.39 |
27 |
3.09 |
4 |
2.63 |
| 25 |
IID |
46 |
0.14 |
6 |
0.69 |
3 |
1.97 |
| 26 |
IIS |
38 |
0.11 |
6 |
0.69 |
1 |
0.66 |
| 27 |
III |
44 |
0.13 |
9 |
1.03 |
3 |
1.97 |
| Totals | 34,066 | 875 | 152 | ||||
Patterns of expression are denoted by a decrease, D, steady state, S, or increase, I, in each one of the three consecutive intervals, 10 to 20, 20 to 40 and 40 to 60 DAA, respectively. All analyses were performed at 0.01 FDR. For the 27 possible patterns, data for individual genes (Genes), Biological Processes (BP) and Metabolic Pathways (MP) are presented; in each case the number and percentage of the item following each pattern are presented.