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. 2014 Feb 27;10(2):e1003454. doi: 10.1371/journal.pcbi.1003454

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© 2014 Amrine et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Each test genome classified is assigned a probability of classification into each of the seven alphaproteobacterial clades indicated. Bootstrap support values under resampling of tRNA sites against (left) all tRNA CIFs and (right) CIFs with heights bits and model retraining (100 replicates). All support values correspond to most probable clade as shown except for Stappia and Labrenzia for which they correspond to Rhizobiales. Complete source code and data to produce this figure, including the full WEKA model for classification of other alphaproteobacterial genomes and code to produce such models from scratch, is provided in Dataset S4.

Inline graphic — Each test genome classified is assigned a probability of classification into each of the seven alphaproteobacterial clades indicated. Bootstrap support values under resampling of tRNA sites against (left) all tRNA CIFs and (right) CIFs with heights bits and model retraining (100 replicates). All support values correspond to most probable clade as shown except for Stappia and Labrenzia for which they correspond to Rhizobiales. Complete source code and data to produce this figure, including the full WEKA model for classification of other alphaproteobacterial genomes and code to produce such models from scratch, is provided in Dataset S4.