Table 1.
Proteins of Tryptophan biosynthesis in Chlamydiae.
| Organisma | Protein acronyms, Trp contentd, NCBI gene numbers, and SEED identifiers | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| TrpR | TrpL | TrpAa | TrpAb | TrpB | TrpD | TrpC | TrpEb | TrpEa | |
| Simkania negevensis Z | 1/91 | NP | 0/490 | 0/193 | 1/330 | 0/264 | 1/207 | 2/389 | 1/253 |
| NCBI gene number | SNE_A10150 | SNE_A10160 | SNE_A10170 | SNE_A10180 | SNE_A10190 | SNE_A10200 | SNE_A10210 | SNE_A10220 | |
| SEED protein page | fig|331113.3.peg.1081 | fig|331113.3.peg.1082 | fig|331113.3.peg.1083 | fig|331113.3.peg.1084 | fig|331113.3.peg.1085 | fig|331113.3.peg.1086 | fig|331113.3.peg.1087 | fig|331113.3.peg.1088 | |
| Chlamydia caviae GPICb | 1/102 | NP | NP | NP | 2/305 | 0/274 | 2/207 | 2/392 | 0/258 |
| NCBI gene number | CCA00562 | CCA00563 | CCA00564 | CCA00565 | CCA00566 | CCA00567 | |||
| SEED protein page | fig|227941.6.peg.606 | fig|227941.6.peg.607 | fig|227941.6.peg.608 | fig|227941.6.peg.609 | fig|227941.6.peg.610 | fig|227941.6.peg.611 | |||
| Chlamydia felis Fe/C-56 | 1/102 | 2/39 | NP | NP | 2/318 | 0/275 | 2/207 | 2/391 | 0/258 |
| NCBI gene number | CF0440 | CF0441 | CF0439 | CF0438 | CF0437 | CF0436 | CF0435 | ||
| SEED protein page | fig|264202.11.peg.459 | fig|264202.11.peg.458 | fig|264202.11.peg.457 | fig|264202.11.peg.456 | fig|264202.11.peg.455 | fig|264202.11.peg.454 | fig|264202.11.peg.453 | ||
| Chlamydia pecorum E58 | 1/93 | NP | NP | NP | 2/327 | 0/290 | 2/208 | 2/393 | 0/256 |
| NCBI gene number | G5S_1088 | G5S_1087 | G5S_1086 | G5S_1085 | G5S_1084 | G5S_1083 | |||
| SEED protein page | fig|331635.3.peg.973 | fig|331635.3.peg.972 | fig|331635.3.peg.971 | fig|331635.3.peg.970 | fig|331635.3.peg.969 | fig|331635.3.peg.968 | |||
| Chlamydia trachomatis D/UW-3/CX | 1/95 | 3/50 | NP | NP | NP | NP | 3/208 | 2/392 | 0/253 |
| NCBI gene number | CT169 | CT169a | CT327 | CT170 | CT171 | ||||
| SEED protein page | fig|272561.5.peg.182 | fig|272561.5.peg.969 | fig|272561.5.peg.352 | fig|272561.5.peg.183 | fig|272561.5.peg.184 | ||||
| Chlamydia muridarum Nigg | NP | NP | NP | NP | NP | NP | 3/209 | NP | NP |
| NCBI gene number | TC065 | ||||||||
| SEED protein page | fig|243161.6.peg.642 | ||||||||
| Coxiella burnetii Dugway 5J108-111c | 1/91 | NP | 0/493 | 0/121 | 0/334 | 0/258 | 1/601 | 1/601 | 0/268 |
| NCBI gene number | CBUD_1566 | CBUD_1249 | CBUD_1249a | CBUD_1251 | CBUD_1252 | CBUD_1253 | CBUD_1253 | CBUD_1255 | |
| SEED protein page | fig|434922.5.peg.1563 | fig|434922.5.peg.1259 | fig|434922.5.peg.1260 | fig|434922.5.peg.1261 | fig|434922.5.peg.1262 | fig|434922.5.peg.1263 | fig|434922.5.peg.1263 | fig|434922.5.peg.1264 | |
a
The following have no Trp pathway genes: Chlamydia abortus, C. pneumoniae, C. psittaci, Protochlamydia amoebophila, Parachlamydia acanthamoebae and Waddlia chondrophila.
b
Chlamydia caviae has a gene (CCA00559) encoding a duplicate TrpEb (0/413) fig|227941.6.peg.600.
c
Coxiella burnetii has the fusion TrpC·TrpEb.
d
Number of Trp residues per amino-acid length shown as numbers with bold fonts.