TABLE 1.
Experimental restraints used to guide docking of PP with hY4R
hY4R residue | PP residue | Low resolution restraint | High resolution restraint | Proposed interaction | Steps imposed | Experimental evidence |
---|---|---|---|---|---|---|
Tyr2.64 | Tyr27 | C-β atoms within 8 Å | None | Unknown | hPP helix placement | Table 2 (Tyr2.64 and Tyr27 single mutants) |
Asp6.59 | Arg35 | C-β atoms within 8 Å | Asp6.59 O-δ and Arg35 NH within 4 Å | Salt bridge | hPP C-terminal folding (low resolution), hY4R loop building (low resolution), final relaxation (high resolution) | Ref. 20 (Asp6.59 and Arg35 single mutants) |
Asn7.32 | Arg33 | C-β atoms within 8 Å | Asn7.32 O-δ and Arg33 NH within 4 Å | Hydrogen bond | hPP C-terminal folding (low resolution), hY4R loop building (low resolution), final relaxation (high resolution) | Table 5, Fig. 5B (Asp7.32 and Arg33 single mutants) |
Phe7.35 | Arg33 | C-β atoms within 8 Å | None | π-cation stacking | hPP C-terminal folding (low resolution), hY4R loop building (low resolution), final relaxation (high resolution) | Ref. 50, Table 4 (Phe7.35 and Arg33 single mutants) |
Phe7.35 | Tyr36 | None | Phe7.35 CZ and Tyr36 CZ within 4 Å | Unknown | Final relaxation (high resolution) | Table 6, Fig. 6 (Phe7.35 and Tyr36 single mutants) |