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. 2013 Dec 27;289(9):5846–5859. doi: 10.1074/jbc.M113.502021

TABLE 1.

Experimental restraints used to guide docking of PP with hY4R

hY4R residue PP residue Low resolution restraint High resolution restraint Proposed interaction Steps imposed Experimental evidence
Tyr2.64 Tyr27 C-β atoms within 8 Å None Unknown hPP helix placement Table 2 (Tyr2.64 and Tyr27 single mutants)
Asp6.59 Arg35 C-β atoms within 8 Å Asp6.59 O-δ and Arg35 NH within 4 Å Salt bridge hPP C-terminal folding (low resolution), hY4R loop building (low resolution), final relaxation (high resolution) Ref. 20 (Asp6.59 and Arg35 single mutants)
Asn7.32 Arg33 C-β atoms within 8 Å Asn7.32 O-δ and Arg33 NH within 4 Å Hydrogen bond hPP C-terminal folding (low resolution), hY4R loop building (low resolution), final relaxation (high resolution) Table 5, Fig. 5B (Asp7.32 and Arg33 single mutants)
Phe7.35 Arg33 C-β atoms within 8 Å None π-cation stacking hPP C-terminal folding (low resolution), hY4R loop building (low resolution), final relaxation (high resolution) Ref. 50, Table 4 (Phe7.35 and Arg33 single mutants)
Phe7.35 Tyr36 None Phe7.35 CZ and Tyr36 CZ within 4 Å Unknown Final relaxation (high resolution) Table 6, Fig. 6 (Phe7.35 and Tyr36 single mutants)