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. 2014 Feb 28;9(2):e89759. doi: 10.1371/journal.pone.0089759

Table 2. Analysis of putative CRP-recognition sequences in 5'-UTRs of cAMP-regulon of Mtb.

Locus (Rv/annotation) Sequencea Position from Start codon
Rv0146 tgtcgaggctttcacc –325
Rv0146 tttcaccatgaacaca –316
Rv0146 tgacaccggcatcacg –45
Rv0146 agcgactcggtttaga –266
Rv0146 tgtccaggcgttgacc –244
Rv0146 cgagaccgtccgcacc –103
Rv0264c gctgatctggatgacc –300
Rv0350/dnaK agcgaccgtcagcacg –301
Rv0350/dnaK cgttagcatgctcagt –135
Rv0677c/mmpS5 tttcactgtactctga –81
Rv0677c/mmpS5 tgttcgacgaattcca –149
Rv0677c/mmpS5 tctgaaatctgtgacg –70
Rv1057 cgtgacctaggtaaca –248
Rv1057 tcagaatttggtcgct –208
Rv1330c tgcggaccgcgtcgga –21
Rv1330c agtcacgtagctcatc –233
Rv1330c tggcatgcggctcgct –276
Rv2025c tctgagcaagctcagc –246
Rv2025c tgcgtatgaatgcaga –82
Rv2590/fadD9 agtgaggggctggaca –206
Rv2590/fadD9 cgtcatcattttgacc –285
Rv2590/fadD9 cgtgccgcatctcaca –133
Rv3830c tgcgcgcagtctcgcc –72
Rv3830c tgtcaatgttgacaga –42
Rv3830c tttgtcaatgttgaca –44

Three hundred fifty base pair long DNA sequences upstream to the respective ORFs were analyzed to identify CRPM-recognition sequence. aThe underlined sequences represent putative CRPM-recognition sequences (TGTGA-N6-TCACA, with two mismatches in any of the arms) in the 5'-UTR of the respective genes.