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. 2014 Feb 28;9(2):e90115. doi: 10.1371/journal.pone.0090115

Table 1. Summary of the barcoded pyrosequencing data sets derived from the saeu-jeot samples and statistical analysis of microbial diversity.

Subject Total reads High quality reads Average read length OTU* Shannon-Weaver* Chao1* Evenness*
Salt conc. Days
0 6866 4662 477 610 (177) 4.9 (4.3) 1013 (282) 0.76 (0.82)
10 12766 9353 490 714 (143) 4.3 (3.7) 1236 (358) 0.65 (0.74)
20 6231 3649 477 323 (119) 3.8 (3.2) 557 (227) 0.66 (0.67)
30 2170 1536 461 174 (125) 4.1 (3.8) 293 (201) 0.80 (0.80)
20% 45 2903 2249 439 215 (95) 4.1 (3.6) 333 (165) 0.76 (0.79)
60 3743 2892 435 229 (94) 4.1 (3.6) 397 (147) 0.76 (0.79)
80 6033 4328 476 161 (53) 2.9 (2.0) 251 (69) 0.56 (0.50)
107 1712 1348 442 150 (107) 3.9 (3.7) 244 (157) 0.78 (0.79)
142 1424 1129 432 131 (88) 3.9 (3.5) 193 (131) 0.80 (0.78)
0 5653 4105 477 518 (161) 4.8 (4.1) 918 (251) 0.77 (0.81)
10 2206 1718 484 187 (129) 3.5 (3.3) 295 (195) 0.66 (0.68)
20 4817 3252 474 188 (88) 3.2 (3.2) 300 (141) 0.61 (0.71)
30 6210 4564 473 280 (86) 3.5 (3.0) 444 (168) 0.62 (0.67)
24% 45 5129 3755 476 301 (99) 3.8 (3.1) 459 (135) 0.67 (0.67)
60 1732 1307 477 124 (94) 3.3 (3.6) 185 (147) 0.68 (0.79)
80 7700 5418 453 521 (143) 4.6 (3.9) 917 (247) 0.74 (0.78)
107 7228 5344 438 524 (145) 4.8 (4.1) 820 (226) 0.76 (0.82)
142 4108 3107 431 266 (109) 4.2 (3.6) 373 (232) 0.75 (0.76)
0 9769 6638 482 630 (172) 5.0 (4.2) 885 (302) 0.77 (0.82)
10 1432 1101 481 216 (180) 4.2 (4.1) 355 (323) 0.79 (0.80)
20 1914 1598 479 248 (163) 4.3 (3.9) 487 (279) 0.77 (0.78)
30 1062 888 482 182 (169) 4.1 (4.1) 437 (359) 0.79 (0.79)
28% 45 2972 2480 492 238 (118) 3.5 (3.2) 371 (190) 0.64 (0.68)
60 959 844 500 74 (74) 2.4 (2.4) 118 (118) 0.55 (0.55)
80 4397 3950 505 122 (38) 2.2 (1.7) 203 (53) 0.47 (0.46)
107 2482 1824 503 86 (52) 2.6 (2.4) 110 (91) 0.58 (0.61)
142 3408 2938 500 94 (51) 2.3 (2.4) 127 (68) 0.50 (0.62)
0 1478 1047 484 134 (112) 3.9 (3.7) 205 (155) 0.79 (0.79)
10 1635 1250 478 218 (165) 4.4 (4.2) 405 (307) 0.81 (0.83)
20 2202 1658 481 246 (155) 4.4 (4.2) 468 (243) 0.79 (0.83)
30 6191 4611 479 465 (152) 4.6 (3.9) 702 (350) 0.75 (0.78)
32% 45 1853 1542 488 301 (218) 4.3 (4.4) 584 (489) 0.76 (0.81)
60 3401 2477 479 309 (160) 4.4 (4.0) 451 (239) 0.77 (0.80)
80 1195 1007 480 197 (165) 4.3 (4.2) 370 (398) 0.82 (0.82)
107 1167 853 476 163 (158) 4.1 (4.1) 267 (247) 0.80 (0.80)
142 2530 2149 485 259 (152) 4.2 (3.8) 423 (339) 0.75 (0.75)

Abbreviation: OTU, operational taxonomic unit.

* The numbers of the high quality reads were normalized to 844 reads and OUT numbers and diversity indices from the original and normalized (in parentheses) sequencing reads were calculated by the RDP pyrosequencing pipeline.