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. 2014 Feb 28;9(2):e90215. doi: 10.1371/journal.pone.0090215

Table 1. The rare variants identified in DLC1 isoform 1.

Variant type Patient ID Gender Age of diagnosis Diagnosis Exon Nucleotide alterationa Amino acid alteration SIFT score SIFT prediction (Inline graphic) Number of mutations in patients Number of mutations in controls In dbSNPb ALT allele frequency in dbSNPc
Private variants 67 M 5 VSD&PFO 2 c.797G>A p.Gly266Glu 0.406 Tolerated 1/151 0/900 Na Na
153 F 8 VSD 3 c.1048G>A* p.Ala350Thr 0.368 Tolerated 1/151 0/900 Na Na
168 F 5 ASD 3 c.1079T>A* p.Met360Lys 0.001 Damaging 1/151 0/900 Na Na
169 F 22 PS 4 c.1252G>A* p.Glu418Lys 0.027 Damaging 1/151 0/900 Na Na
89 F 2 PDA 4 c.1298C>A p.Thr433Asn 0.02 Damaging 1/151 0/900 Na Na
131 F 8 PDA 9 c.[1661A>T(+)1662T>C]* p.Asp554Val 0.014 Damaging 1/151 0/900 Na Na
190 F 7 VSD 9 c.[1661A>T(+)1662T>C]* p.Asp554Val 0.014 Damaging 1/151 0/900 Na Na
Other rare variants 49 F 9 TOF 2 c.659C>T p.Ala220Val 1 Tolerated 1/151 1/900 Na Na
61 F 6 TOF 3 c.1051C>T p.Arg351Trp 0 Damaging 1/151 2/900 rs144283917 2.324/5869
42 F 17 VSD 4 c.1237T>A* p.Leu413Met 0.005 Damaging 1/151 0/900 rs143447199 1/4545
55 F 26 PDA 9 c.1683C>A p.Asp561Glu 0.171 Tolerated 1/151 2/900 rs201661577 5/2174
124 F 4 VSD 9 c.2854C>G* p.Leu952Val 0.003 Damaging 1/151 0/900 rs184157214 1/2000
28 M 1 VSD 16 c.4111G>C* p.Val1371Leu 0.016 Damaging 1/151 0/900 rs142865083 1/2000
8 M 12 VSD 18 c.4533C>G p.Ile1511Met 0.001 Damaging 1/151 0/900 rs78322853 Na

Note. Na, no available data; M, male; F, female; VSD, ventricular septal defect; PFO, patent foramen ovale; ASD, atrial septal defect; PS, pulmonary stenosis; PDA, patent ductus arteriosus; TOF, tetralogy of Fallot. a, Nucleotide numbering is according to the RefSeq database NM_182643.2. b, The version of dbSNP used in the table is dbSNP build 137. c, The alternative allele frequency form the dbSNP database is calculated by the alternative allele count/two times the number of individuals assayed. *The mutant vectors were constructed according to these variants.