Table 1. Information on the selected reference genes.
Gene name | Gene description | Gene IDa | Arabidopsis homolog locusb | E-value | Forward primer seqence 5′–3′ | Reverse primer seqence 5′–3′ | Productsize (bp) | Amplificationefficiency(%) | R2 |
ClACT | β-Actin | Cla007792 | AT3G18780 | 0 | F:CCATGTATGTTGCCATCCAG | R:GGATAGCATGGGGTAGAGCA | 140 | 103.9 | 0.989 |
ClCAC | Clathrin adaptor complex subunit | Cla020794 | AT4G24550 | 5e-50 | F:AATTGTGGTTGATGCTGCAC | R:TGACAGCTGTACCTGGCATC | 94 | 97.2 | 0.992 |
ClEF1α | Elongation factor 1-α | Cla010539 | AT5G60390 | 0 | F: AGCACGCTCTTCTTGCTTTC | R:ACGATTTCGTCGTACCTTGC | 115 | 96.4 | 0.996 |
ClGAPDH | Glyceraldehy-3-phosphate-dehydrogenase | Cla013454 | AT1G16300 | 2e-80 | F:CTGGCAGTACTTTGCCAACA | R:AGGATTGGAGAGGAGGTCGT | 87 | 92.3 | 0.991 |
ClIDH | NADP-isocitrate dehydrogenase | Cla009135 | AT1G65930 | 2e-71 | F:TGGCCTCTTTACCTAAGCACA | R:ATATGCCAGCAGCCTCAAAC | 124 | 94.0 | 0.991 |
ClLUG | Leunig | Cla022288 | AT4G32551 | 3e-62 | F:TTGCTGGTCATTGGATGCTA | R:GCCGAAGCAACTAGACCTGA | 138 | 103.3 | 0.995 |
ClPP2A | Protein phosphatase 2Aregulatory subunit A | Cla021905 | AT1G69960 | e-125 | F:AAGAGCCCACCAGCTTGTAA | R:TGTTCTCCCCAATCTCAAGG | 136 | 101.0 | 0.996 |
ClPTB | Polypyrimidine tract-binding protein 1 | Cla004906 | AT3G01150 | 2e-15 | F:GGAGCAAACAGAAATCAAGC | R:AGCAGGCTCAGAGGAAGATG | 133 | 107.9 | 0.992 |
ClRPS2 | Ribosomal protein S | Cla021565 | AT1G04270 | 3e-67 | F:TGGCACTGATCAAGAAGCTG | R:TGATCATATTGCGGAGGTGA | 97 | 98.4 | 0.996 |
ClSAND | SAND family protein | Cla001870 | AT2G28390 | 4e-42 | F:CAATTAGCAGCCGTCAACAA | R:GTTTTGTGAGGGCCAATTTC | 100 | 109.6 | 0.996 |
ClTUA | α-Tubulin | Cla003129 | AT1G64740 | e-120 | F:CTTGCTGGGAGCTCTATTGC | R:AACGGATTAAAAGCGTCGTG | 105 | 94.6 | 0.992 |
ClUBC2 | Ubiquitin-conjugating enzyme E2 | Cla010164 | AT2G02760 | 2e-81 | F:CCAAATAAGCCACCGACAGT | R:TCATAGATTGGGCTCCATTG | 118 | 93.7 | 0.991 |
ClUBCP | Ubiquitin carrier protein | Cla010163 | AT1G14400 | 6e-81 | F:ACCAACAGTCCGCTTTGTGT | R:ATTGGGCTCCACTGATTTTG | 101 | 96.6 | 0.995 |
ClYLS8 | Yellow-leaf-specific proein8 | Cla020175 | AT5G08290 | e-78 | F:AGAACGGCTTGTGGTCATTC | R:GAGGCCAACACTTCATCCAT | 83 | 94.4 | 0.995 |
Cl18SrRNA c | 18S ribosomal RNA | F:AGCCTGAGAAACGGCTACCACATC | R:ACCAGACTCGAAGAGCCCGGTAT | 92.1 | 0.995 |
Watermelon gene ID in Cucurbit Genomics Database (http://www.icugi.org);
Arabidopsis gene ID in TAIR database (http://www.arabidopsis.org/);
The primer pair of 18SrRNA previously published was used here (Guo et al. 2011).