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. 2014 Feb 28;9(2):e90612. doi: 10.1371/journal.pone.0090612

Table 1. Information on the selected reference genes.

Gene name Gene description Gene IDa Arabidopsis homolog locusb E-value Forward primer seqence 5′–3′ Reverse primer seqence 5′–3′ Productsize (bp) Amplificationefficiency(%) R2
ClACT β-Actin Cla007792 AT3G18780 0 F:CCATGTATGTTGCCATCCAG R:GGATAGCATGGGGTAGAGCA 140 103.9 0.989
ClCAC Clathrin adaptor complex subunit Cla020794 AT4G24550 5e-50 F:AATTGTGGTTGATGCTGCAC R:TGACAGCTGTACCTGGCATC 94 97.2 0.992
ClEF1α Elongation factor 1-α Cla010539 AT5G60390 0 F: AGCACGCTCTTCTTGCTTTC R:ACGATTTCGTCGTACCTTGC 115 96.4 0.996
ClGAPDH Glyceraldehy-3-phosphate-dehydrogenase Cla013454 AT1G16300 2e-80 F:CTGGCAGTACTTTGCCAACA R:AGGATTGGAGAGGAGGTCGT 87 92.3 0.991
ClIDH NADP-isocitrate dehydrogenase Cla009135 AT1G65930 2e-71 F:TGGCCTCTTTACCTAAGCACA R:ATATGCCAGCAGCCTCAAAC 124 94.0 0.991
ClLUG Leunig Cla022288 AT4G32551 3e-62 F:TTGCTGGTCATTGGATGCTA R:GCCGAAGCAACTAGACCTGA 138 103.3 0.995
ClPP2A Protein phosphatase 2Aregulatory subunit A Cla021905 AT1G69960 e-125 F:AAGAGCCCACCAGCTTGTAA R:TGTTCTCCCCAATCTCAAGG 136 101.0 0.996
ClPTB Polypyrimidine tract-binding protein 1 Cla004906 AT3G01150 2e-15 F:GGAGCAAACAGAAATCAAGC R:AGCAGGCTCAGAGGAAGATG 133 107.9 0.992
ClRPS2 Ribosomal protein S Cla021565 AT1G04270 3e-67 F:TGGCACTGATCAAGAAGCTG R:TGATCATATTGCGGAGGTGA 97 98.4 0.996
ClSAND SAND family protein Cla001870 AT2G28390 4e-42 F:CAATTAGCAGCCGTCAACAA R:GTTTTGTGAGGGCCAATTTC 100 109.6 0.996
ClTUA α-Tubulin Cla003129 AT1G64740 e-120 F:CTTGCTGGGAGCTCTATTGC R:AACGGATTAAAAGCGTCGTG 105 94.6 0.992
ClUBC2 Ubiquitin-conjugating enzyme E2 Cla010164 AT2G02760 2e-81 F:CCAAATAAGCCACCGACAGT R:TCATAGATTGGGCTCCATTG 118 93.7 0.991
ClUBCP Ubiquitin carrier protein Cla010163 AT1G14400 6e-81 F:ACCAACAGTCCGCTTTGTGT R:ATTGGGCTCCACTGATTTTG 101 96.6 0.995
ClYLS8 Yellow-leaf-specific proein8 Cla020175 AT5G08290 e-78 F:AGAACGGCTTGTGGTCATTC R:GAGGCCAACACTTCATCCAT 83 94.4 0.995
Cl18SrRNA c 18S ribosomal RNA F:AGCCTGAGAAACGGCTACCACATC R:ACCAGACTCGAAGAGCCCGGTAT 92.1 0.995
a

Watermelon gene ID in Cucurbit Genomics Database (http://www.icugi.org);

b

Arabidopsis gene ID in TAIR database (http://www.arabidopsis.org/);

c

The primer pair of 18SrRNA previously published was used here (Guo et al. 2011).

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