Table 12.
Alignment statistics of reads mapped against influenza genomes
| Platform | Sample Description | Reads Mapped (% Mapped) | Molecular Length (bp) | Total Mapped (bp) |
|---|---|---|---|---|
| HeliScope |
Grand Plaza Bulk 1 |
3 (0.00%) |
24.0 ± 0.0 |
72 |
| |
Grand Plaza Bulk 2 |
5 (0.00%) |
24.0 ± 0.0 |
120 |
| |
Grand Plaza Phos. 1 |
3 (0.00%) |
24.0 ± 0.0 |
72 |
| |
Grand Plaza Phos. 2 |
0 (0.00%) |
— |
0 |
| |
Churchyard Bulk 1 |
3 (0.00%) |
24.0 ± 0.0 |
72 |
| |
Churchyard Bulk 2 |
5 (0.00%) |
24.0 ± 0.9 |
122 |
| |
Churchyard Phos. 1 |
3 (0.00%) |
24.0 ± 0.0 |
72 |
| |
Churchyard Phos. 2 |
5 (0.00%) |
24.0 ± 0.0 |
120 |
| |
Grand Plaza Sheared |
0 (0.00%) |
— |
0 |
| |
Churchyard Sheared |
0 (0.00%) |
— |
0 |
| |
Soil Bulk |
0 (0.00%) |
— |
0 |
| |
Soil Sheared |
0 (0.00%) |
— |
0 |
| HiSeq 2500 |
TP04 |
0 (0.00%) |
— |
0 |
| |
TP09 |
0 (0.00%) |
— |
0 |
| |
TP10 |
0 (0.00%) |
— |
0 |
| |
TP18 |
0 (0.00%) |
— |
0 |
| |
TP37 |
0 (0.00%) |
— |
0 |
| |
TP48 |
0 (0.00%) |
— |
0 |
| Soil Bulk | 0 (0.00%) | — | 0 |
“Bulk” samples are the unsheared bulks. “Phos.” samples are the phosphatase-treated unsheared bulks. “Sheared” samples are the sheared bulks. “% Mapped” indicates the percentage of the total number of reads comprised by the reads mapped onto influenza genomes. “Molecular Length” is the mean length (± standard deviation) of the mapped reads.