Table 5.
Rotational diffusion tensor characteristics for cUUCGg tetraloop.
Method | Nucleotides/Type | Datasetc | Dx * | Dy | Dz | α* | β | γ | τc * | ζ | η |
---|---|---|---|---|---|---|---|---|---|---|---|
Published (Akke et al, 1997) | core/NH | 0°C | 2.77 - |
2.77 - |
3.71 - |
- - |
- - |
- - |
5.4 ±0.1 | 1.34 ±0.12 | - - |
ROTDIF 3a | core/NH | 0°C | 2.82 ±0.56 | 2.82 ±0.56 | 3.71 ±1.32 | 18 ±40 | 133 ±19 | - - |
5.35 ±0.20 | 1.31 ±1.33 | - - |
ELM | - | 0°C | 2.14 | 2.67 | 3.66 | 1 | 91 | 42 | 5.90 | 1.52 | 0.63 |
| |||||||||||
Published (Duchardt and Schwalbe, 2005) | core/NH&CH | 25°C | 6.46 - |
6.46 - |
8.72 - |
- - |
- - |
- - |
2.31 ±0.13 | 1.35 ±0.02 | - - |
ROTDIF 3a | core/NH&CH | 25°C | 5.29 ±0.07 | 5.29 ±0.07 | 10.91 ±0.16 | 173 ±1 | 85 ±1 | - - |
2.33 ±0.01 | 2.06 ±0.06 | - - |
ROTDIF 3b | core/NH&CH | 25°C | 4.97 ±0.08 | 5.53 ±0.08 | 10.97 ±0.16 | 175 ±1 | 85 ±1 | 35 ±6 | 2.33 ±0.01 | 2.09 ±0.06 | 0.15 ±0.02 |
ROTDIF 3b (Robust) | all/NH&CH | 25°C | 4.73 ±0.13 | 5.24 ±0.13 | 11.56 ±0.26 | 174 ±2 | 86 ±1 | 20 ±9 | 2.32 ±0.01 | 2.32 ±0.10 | 0.12 ±0.03 |
ELM | - | 25°C | 4.67 | 5.81 | 7.97 | 1 | 91 | 42 | 2.71 | 1.52 | 0.63 |
| |||||||||||
Published (Ferner et al, 2008) | core/CH | 44°C | 9.42 | 9.42 | 13.84 | - | - | - | 1.53 | 1.47 | - |
ROTDIF 3a | core/CH | 44°C | 7.14 ±0.26 | 12.19 ±0.25 | 12.19 ±0.25 | 131 ±4 | 162 ±4 | - - |
1.59 ±0.02 | 0.59 ±0.03 | - - |
ROTDIF 3b | core/CH | 44°C | 6.96 ±0.27 | 11.50 ±0.40 | 13.11 ±0.61 | 50 ±20 | 116 ±17 | 107 ±38 | 1.58 ±0.02 | 0.57 ±0.24 | 0.43 ±0.23 |
ROTIDF 3a (Robust) | all/CH | 44°C | 7.31 ±0.39 | 12.15 ±0.52 | 12.15 ±0.52 | 138 ±13 | 166 ±9 | - - |
1.58 ±0.03 | 0.60 ±0.15 | - - |
ELM | - | 44°C | 7.55 | 9.41 | 12.90 | 1 | 91 | 42 | 1.67 | 1.52 | 0.63 |
Axially-symmetric model was used.
Anisotropic model was used.
Akke et al. collected at 0°C, Duchardt et al. collected at 25°C, and Ferner et al. collected at 44°C.
The units are 107s−1 for Dx, Dy, Dz, ns for τc, and degrees for α, β, and γ angles.