Table 3. Relative comparison of coiled-coil parameters for gp26-2M fibers and gp26-wt.
gp26-2M fibers | gp26-wt (PDB entry 3c9i) | ||||
---|---|---|---|---|---|
Fiber | A | B | C | D | Molecule A |
Coiled-coil parameters | |||||
Residues | 42–195 | 42–195 | 42–195 | 42–195 | 42–139 |
Coiled-coil radius (Å) | 6.15 ± 0.44 | 6.15 ± 0.45 | 6.15 ± 0.41 | 6.19 ± 0.45 | 6.13 ± 0.47 |
Residues/superhelical turn | 93.6 | 93 | 98 | 98 | 95 |
Coiled-coil pitch (Å) | 134.3 ± 19.9 | 133.5 ± 21.1 | 141.2 ± 19.3 | 140.5 ± 21.9 | 138.0 ± 16.9 |
Coiled-coil phase (°)/No. of residues | −598.91/154 | −601.52/154 | −571.95/154 | −573.83/154 | −370.65/98 |
α-Helical parameters | |||||
Residues per turn | 3.63 ± 0.09 | 3.64 ± 0.10 | 3.63 ± 0.12 | 3.63 ± 0.12 | 3.64 ± 0.09 |
Rise per residue (Å) | 1.51 ± 0.05 | 1.51 ± 0.05 | 1.51 ± 0.05 | 1.51 ± 0.05 | 1.51 ± 0.04 |
α-Helix radius (Å) | 2.28 ± 0.06 | 2.28 ± 0.06 | 2.28 ± 0.07 | 2.28 ± 0.07 | 2.30 ± 0.05 |
Radius of curvature (Å) | 66.34 | 67.15 | 71.51 | 70.72 | 80.52 |
Crick angles | |||||
Position a (°) | 18.33 ± 2.6 | 17.36 ± 3.11 | 17.72 ± 2.74 | 18.20 ± 2.81 | 17.39 ± 3.01 |
Position d (°) | −31.99 ± 4.23 | −32.56 ± 4.83 | −32.52 ± 4.15 | −32.60 ± 4.16 | −34.49 ± 3.31 |