Table 6.
gender |
Grade |
Stage |
pN |
pM |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Gene (SNP ID) | Genotype | female | male | p value | 1+2 | 3+4 | p value | pT1+pT2 | pT3+pT4 | p value | (−) | (+) | p value | (−) | (+) | p value |
n=65 | n=145 | n=185 | n=25 | n=159 | n=51 | n=200 | n=10 | n=191 | n=19 | |||||||
DKK2 (rs17037102) | GG | 35 | 70 | reference | 92 | 13 | reference | 79 | 26 | reference | 99 | 6 | reference | 94 | 11 | reference |
GA | 24 | 68 | 0.27 | 82 | 10 | 0.74 | 70 | 22 | 0.89 | 89 | 3 | 0.41 | 85 | 7 | 0.49 | |
AA | 6 | 7 | 0.36 | 11 | 2 | 0.76 | 10 | 3 | 0.89 | 12 | 1 | 0.78 | 12 | 1 | 0.75 | |
GA+AA | 30 | 75 | 0.45 | 93 | 12 | 0.83 | 80 | 25 | 0.87 | 101 | 4 | 0.52 | 97 | 8 | 0.47 | |
DKK2 (rs419558) | CC | 39 | 80 | reference | 107 | 12 | reference | 91 | 28 | reference | 118 | 1 | reference | 113 | 6 | reference |
CT | 17 | 46 | 0.42 | 56 | 7 | 0.83 | 48 | 15 | 0.96 | 57 | 6 | 0.004 | 54 | 9 | 0.03 | |
TT | 9 | 19 | 0.94 | 22 | 6 | 0.11 | 20 | 8 | 0.58 | 25 | 3 | 0.004 | 24 | 4 | 0.08 | |
CT+TT | 26 | 65 | 0.51 | 78 | 13 | 0.35 | 68 | 23 | 0.77 | 82 | 9 | 0.002 | 78 | 13 | 0.02 | |
DKK2 (rs447372) | GG | 39 | 78 | reference | 105 | 12 | reference | 90 | 27 | reference | 116 | 1 | reference | 111 | 6 | reference |
GA | 17 | 48 | 0.31 | 58 | 7 | 0.91 | 49 | 16 | 0.82 | 59 | 6 | 0.005 | 56 | 9 | 0.04 | |
AA | 9 | 19 | 0.91 | 22 | 6 | 0.11 | 20 | 8 | 0.54 | 25 | 3 | 0.004 | 24 | 4 | 0.09 | |
GA+AA | 26 | 67 | 0.41 | 80 | 13 | 0.41 | 69 | 24 | 0.65 | 84 | 9 | 0.003 | 80 | 13 | 0.03 | |
DKK3 (rs3206824) | GG | 50 | 100 | reference | 136 | 14 | reference | 116 | 34 | reference | 143 | 7 | reference | 138 | 12 | reference |
GA | 13 | 40 | 0.23 | 43 | 10 | 0.06 | 37 | 16 | 0.28 | 50 | 3 | 0.77 | 46 | 7 | 0.26 | |
AA | 2 | 5 | 0.79 | 6 | 1 | 0.66 | 6 | 1 | 0.61 | 7 | 0 | 7 | 0 | |||
GA+AA | 15 | 45 | 0.24 | 49 | 11 | 0.07 | 43 | 17 | 0.39 | 57 | 3 | 0.92 | 53 | 7 | 0.41 | |
DKK3 (rs11022095) | GG | 11 | 17 | reference | 25 | 3 | reference | 21 | 7 | reference | 27 | 1 | reference | 23 | 5 | reference |
GA | 28 | 60 | 0.47 | 76 | 12 | 0.68 | 67 | 21 | 0.91 | 83 | 5 | 0.61 | 80 | 8 | 0.21 | |
AA | 26 | 68 | 0.24 | 84 | 10 | 0.99 | 71 | 23 | 0.95 | 90 | 4 | 0.87 | 88 | 6 | 0.06 | |
GA+AA | 54 | 128 | 0.31 | 160 | 22 | 0.83 | 138 | 44 | 0.93 | 173 | 9 | 0.75 | 168 | 14 | 0.08 | |
DKK3 (rs1472189) | CC | 47 | 108 | reference | 138 | 17 | reference | 119 | 36 | reference | 150 | 5 | reference | 146 | 9 | reference |
CT | 16 | 35 | 0.89 | 46 | 5 | 0.82 | 38 | 13 | 0.74 | 46 | 5 | 0.05 | 41 | 10 | 0.003 | |
TT | 2 | 2 | 0.41 | 1 | 3 | 0.0001 | 2 | 2 | 0.21 | 4 | 0 | 4 | 0 | |||
CT+TT | 18 | 37 | 0.74 | 47 | 8 | 0.48 | 40 | 15 | 0.55 | 50 | 5 | 0.07 | 45 | 10 | 0.005 | |
DKK3 (rs7396187) | GG | 46 | 92 | reference | 127 | 11 | reference | 108 | 30 | reference | 132 | 6 | reference | 127 | 11 | reference |
GC | 16 | 42 | 0.43 | 46 | 12 | 0.01 | 40 | 18 | 0.11 | 54 | 4 | 0.46 | 51 | 7 | 0.36 | |
CC | 3 | 11 | 0.36 | 12 | 2 | 0.42 | 11 | 3 | 0.92 | 14 | 0 | 13 | 1 | 0.92 | ||
GC+CC | 19 | 53 | 0.31 | 58 | 14 | 0.014 | 51 | 21 | 0.14 | 68 | 4 | 0.69 | 64 | 8 | 0.45 | |
DKK3 (rs2291599) | CC | 34 | 67 | reference | 93 | 8 | reference | 76 | 25 | reference | 95 | 6 | reference | 90 | 11 | reference |
CT | 26 | 55 | 0.82 | 70 | 11 | 0.21 | 62 | 19 | 0.84 | 77 | 4 | 0.77 | 74 | 7 | 0.61 | |
TT | 5 | 23 | 0.11 | 22 | 6 | 0.04 | 21 | 7 | 0.98 | 28 | 0 | 27 | 1 | 0.24 | ||
CT+TT | 31 | 78 | 0.41 | 92 | 17 | 0.08 | 83 | 26 | 0.88 | 105 | 4 | 0.44 | 101 | 8 | 0.37 | |
DKK4 (rs2073664) | CC | 40 | 104 | reference | 127 | 17 | reference | 107 | 37 | reference | 137 | 7 | reference | 129 | 15 | reference |
CT | 18 | 22 | 0.03 | 35 | 5 | 0.91 | 30 | 10 | 0.92 | 37 | 3 | 0.52 | 36 | 4 | 0.94 | |
TT | 7 | 19 | 0.93 | 23 | 3 | 0.96 | 22 | 4 | 0.26 | 26 | 0 | 26 | 0 | |||
CT+TT | 25 | 41 | 0.14 | 58 | 8 | 0.95 | 52 | 14 | 0.48 | 63 | 3 | 0.92 | 62 | 4 | 0.31 | |
sFRP4 (rs1802073) | CC | 15 | 36 | reference | 42 | 9 | reference | 37 | 14 | reference | 47 | 4 | reference | 43 | 7 | reference |
CA | 25 | 57 | 0.89 | 70 | 12 | 0.64 | 65 | 17 | 0.37 | 79 | 3 | 0.29 | 76 | 6 | 0.21 | |
AA | 25 | 52 | 0.71 | 73 | 4 | 0.02 | 57 | 20 | 0.85 | 74 | 3 | 0.34 | 71 | 6 | 0.26 | |
CA+AA | 50 | 109 | 0.78 | 143 | 16 | 0.15 | 122 | 37 | 0.54 | 153 | 6 | 0.24 | 147 | 12 | 0.17 | |
sFRP4 (rs1802074) | AA | 15 | 21 | reference | 32 | 4 | reference | 28 | 8 | reference | 35 | 1 | reference | 35 | 1 | reference |
AG | 15 | 54 | 0.03 | 65 | 4 | 0.33 | 53 | 16 | 0.92 | 67 | 2 | 0.97 | 64 | 5 | 0.35 | |
GG | 35 | 70 | 0.36 | 88 | 17 | 0.09 | 78 | 27 | 0.68 | 98 | 7 | 0.38 | 92 | 13 | 0.09 | |
AG+GG | 50 | 124 | 0.13 | 153 | 21 | 0.87 | 131 | 43 | 0.75 | 165 | 9 | 0.54 | 156 | 18 | 0.15 | |
SMAD7 (rs12953717) | CC | 46 | 79 | reference | 108 | 17 | reference | 94 | 31 | reference | 119 | 6 | reference | 111 | 14 | reference |
CT | 13 | 55 | 0.01 | 61 | 7 | 0.51 | 51 | 17 | 0.98 | 65 | 3 | 0.91 | 65 | 3 | 0.11 | |
TT | 6 | 11 | 0.91 | 16 | 1 | 0.37 | 14 | 3 | 0.52 | 16 | 1 | 0.85 | 15 | 2 | 0.95 | |
CT+TT | 19 | 66 | 0.03 | 77 | 8 | 0.36 | 65 | 20 | 0.83 | 81 | 4 | 0.97 | 80 | 5 | 0.19 | |
DAAM2 (rs6937133) | GG | 12 | 18 | reference | 26 | 4 | reference | 22 | 8 | reference | 29 | 1 | reference | 26 | 4 | reference |
GA | 20 | 45 | 0.37 | 59 | 6 | 0.54 | 48 | 17 | 0.96 | 62 | 3 | 0.77 | 56 | 9 | 0.95 | |
AA | 33 | 82 | 0.23 | 100 | 15 | 0.97 | 89 | 26 | 0.64 | 109 | 6 | 0.67 | 109 | 6 | 0.12 | |
GA+AA | 53 | 127 | 0.25 | 159 | 21 | 0.79 | 137 | 43 | 0.74 | 171 | 9 | 0.69 | 165 | 15 | 0.38 | |
DAAM2 (rs2504106) | TT | 19 | 53 | reference | 64 | 8 | reference | 57 | 15 | reference | 68 | 4 | reference | 66 | 6 | reference |
TC | 29 | 55 | 0.27 | 73 | 11 | 0.71 | 62 | 22 | 0.43 | 80 | 4 | 0.83 | 73 | 11 | 0.34 | |
CC | 17 | 37 | 0.53 | 48 | 6 | 0.99 | 40 | 14 | 0.51 | 52 | 2 | 0.63 | 52 | 2 | 0.29 | |
TC+CC | 46 | 92 | 0.31 | 121 | 17 | 0.79 | 102 | 36 | 0.39 | 132 | 6 | 0.69 | 125 | 13 | 0.79 |
note; Considering multiple comparison,
p-value of < 0.05 was regarded as statistically significant