Table 6. Similarity comparison of all-against-all family genotypes plus a non-European (non-CEU) male of Indian ethnic background.
Matches denote identical genotypes for the same SNP (e.g. AA/AA); half-match, only one of the alleles is identical (e.g. AT/AA) and conflict means both alleles are different (e.g. CG/AT).
| Mother | matches:
half matches: conflict: |
930342
0 0 |
100.0%
0.0% 0.0% |
||||||||||
| identity:
difference: |
930342
0 |
100.0%
0.0% |
|||||||||||
| total: | 930342 | 100.0% | |||||||||||
| Father | matches:
half matches: conflict: |
537331
335157 57854 |
57.8%
36.0% 6.2% |
930342
0 0 |
100.0%
0.0% 0.0% |
||||||||
| identity:
difference: |
704910
225433 |
75.8%
24.2% |
930342
0 |
100.0%
0.0% |
|||||||||
| total: | 930342 | 100.0% | 930342 | 100.0% | |||||||||
| Daughter | matches:
half matches: conflict: |
650399
276334 3609 |
69.9%
29.7% 0.4% |
653926
273483 2933 |
70.3%
29.4% 0.3% |
930342
0 0 |
100.0%
0.0% 0.0% |
||||||
| identity:
difference: |
788566
141776 |
84.8%
15.2% |
790668
139675 |
85.0%
15.0% |
930342
0 |
100.0%
0.0% |
|||||||
| total: | 930342 | 100.0% | 930342 | 100.0% | 930342 | 100.0% | |||||||
| Aunt | matches:
half matches: conflict: |
661316
250278 18748 |
71.1%
26.9% 2.0% |
537723
335063 57556 |
57.8%
36.0% 6.2% |
586549
310933 32860 |
63.0%
33.4% 3.5% |
930342
0 0 |
100.0%
0.0% 0.0% |
||||
| identity:
difference: |
786455
143887 |
84.5%
15.5% |
705254.5
225088 |
75.8%
24.2% |
742016
188327 |
79.7%
20.2% |
930342
0 |
100.0%
0.0% |
|||||
| total: | 930342 | 100.0% | 930342 | 100.0% | 930342 | 100.0% | 930342 | 100.0% | |||||
| Son | matches:
half matches: conflict: |
357419
168682 1807 |
67.7%
32.0% 0.3% |
358003
168344 1561 |
67.8%
31.9% 0.3% |
386014
132693 9201 |
73.1%
25.1% 1.7% |
321410
187749 18749 |
60.9%
35.6% 3.6% |
556694
0 0 |
100.0%
0.0% 0.0% |
||
| identity:
difference: |
441760
86148 |
83.7%
16.3% |
442175
85733 |
83.8%
16.2% |
452361
75548 |
85.7%
14.3% |
415285
112624 |
78.7%
21.3% |
556694
0 |
100.0%
0.0% |
|||
| total: | 527908 | 100.0% | 527908 | 100.0% | 527908 | 100.0% | 527908 | 100.0% | 556694 | 100.0% | |||
| Non-CEU | matches:
half matches: conflict: |
530234
340807 59106 |
57.0%
36.6% 6.4% |
528933
341639 59575 |
56.9%
36.7% 6.4% |
528747
342833 58567 |
56.8%
36.9% 6.3% |
530171
341419 58557 |
57.0%
36.7% 6.3% |
283484
209091 36191 |
53.6%
39.5% 6.8% |
934670
0 0 |
100.0%
0.0% 0.0% |
| identity:
difference: |
700638
229510 |
75.3%
24.7% |
699753
230395 |
75.2%
24.8% |
700164
229984 |
75.3%
24.7% |
700881
229267 |
75.4%
24.6% |
388030
140737 |
73.4%
26.6% |
934670
0 |
100.0%
0.0% |
|
| total: | 930147 | 100.0% | 930147 | 100.0% | 930147 | 100.0% | 930147 | 100.0% | 528766 | 100.0% | 934670 | 100.0% | |
| Mother | Father | Daughter | Aunt | Son | Non-CEU | ||||||||