Table 1.
T4 | T7 | E. coli | Archaea | S. cerevisiae | Human | |
---|---|---|---|---|---|---|
Length of Okazaki fragment (kb)a | 1.5–2.2 | 2.3 | 1.5 | 0.09–0.16 | 0.16b | 0.1–0.2c |
Primer length (nt)d | 4–5 | 4–5 | 10–12 | ∼10 | 8–10 | 11–14 |
SSB/RPA binding (nt)e,f | 10 | 14 | 32 or 64 | 4.5–5 | 19 or 27 | 8 or 30 |
Rate of fork progression (bp sec−1)g | 600 | 370 | 600–1000 | 88–330 | 26–48 | 25 |
Replicon size (kb)h | 40 | 166 | 4600 | 1000, 700, 500 | 36 | ∼100 |
aEdenberg and Huberman 1975; Kornberg and Baker 1992; Debyser et al. 1994; Chastain et al. 2000; Matsunaga et al. 2003; Smith and Whitehouse 2012.
bOkazaki fragment length matches that of nucleosome binding in yeast. Multiples of 165 nt, 330 nt, and 495 nt were reported.
cExtrapolation from the study of SV40 system.
dFrick and Richardson 2001; Matsunaga et al. 2003.
eKim et al. 1992; Kornberg and Baker 1992; Blackwell and Borowiec 1994; Kumaran et al. 2006.
fExtent of binding by a functional unit; T4 gp32 is a monomer, T7 gp2.5 is a homodimer, bacterial SSB is a homotetramer, archaeal SSB is a monomer, and the eukaryotic RPAs are heterotrimers.
gEdenberg and Huberman 1975; Rabkin and Richardson 1990; Kornberg and Baker 1992; Myllykallio et al. 2000; Raghuraman et al. 2001; Kerr et al. 2003; Duggin et al. 2008.
hEdenberg and Huberman 1975; Kornberg and Baker 1992; Duggin et al. 2008; Liachko et al. 2010.