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. 2014 Feb 20;8:21. doi: 10.1186/1752-0509-8-21

Table 1.

Comparison of true and reconstructed splits and weights on the artificial tree by 6 methods

True Phylo
QuartetS
QuartetA
QuartetM
Quartet-Net
Neighbor-Net
Neighbor-Joining
Split Wei Split Wei BV Split Wei BV Split Wei BV Split Wei BV Split Wei BV Split Wei BV
ab
1
ab
1
100
ab
1
100
ab
1
100
ab
1
100
ab
1
100
ab
1
100
abcd
3
abcd
3.03
100
abcd
3
100
abcd
2.98
100
abcd
3.03
100
abcd
2.98
100
abcd
2.98
100
abef
1
abef
1.03
100
abef
1.03
100
abef
1.03
100
abef
1.03
100
abef
1.02
100
abef
1.02
100
a
1
a
1.03
100
a
0.99
100
a
0.98
100
a
1.03
100
a
1.04
100
a
1.04
100
b
1
b
1.04
100
b
1
100
b
0.99
100
b
1.04
100
b
1.05
100
b
1.05
100
c
1
c
1.03
100
c
0.99
100
c
0.98
100
c
1.03
100
c
1.04
100
c
1.04
100
d
1
d
1.03
100
d
0.99
100
d
0.98
100
d
1.03
100
d
1.04
100
d
1.04
100
e
1
e
1.04
100
e
1.01
100
e
1.00
100
e
1.04
100
e
1.04
100
e
1.05
100
f
1
f
1.06
100
f
1.03
100
f
1.02
100
f
1.06
100
f
1.06
100
f
1.06
100
 
 
 
 
 
 
 
 
 
 
 
abc
0.01
15
abc
0.02
31
 
 
 
 
 
 
 
 
 
 
 
 
 
 
abd
0.02
15
abd
0.02
40
 
 
 
 
 
 
 
 
 
 
 
 
 
 
acef
0.01
15
acef
0.01
21
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
abf
0.02
34
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
acd
0.02
33
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
aef
0.02
36
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
abe
0.02
35
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
ad
0.01
16
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
ae
0.01
15
 
 
 
                            adef 0.01 19      

The column “True Phylo” denotes the underlying truth and the columns “QuartetS”, “QuartetA”, “QuartetM”, “Quartet-Net”, “Neighbor-Net”, and “Neighbor-Joining” denote the reconstructed results by each method respectively. In addition, “Wei” denotes the average weight of the corresponding split over 100 runs; “BV” denote bootstrap value.