Table 2. List of sHsp genes involved in different abiotic stress conditions and development of barley.
Name | HarvEST ID | Fl cDNA ID | Affymetrix ID | Full/partial | ORF (bp) | Protein (AA) | M.wt (kDa) | pI | Intron | Chromosome localization | 5′ upstream region (bp) | Localization |
HvHsp16.9-CI | 35_14860 | AK362925 | Contig2004_s_at | Full | 456 | 151 | 16.95 | 5.92 | 3 | Cytoplasm | ||
HvHsp16.88-CI | 35_14863 | AK355146 | Contig2008_s_at | Full | 453 | 150 | 16.88 | 5.92 | 3 | 1367 | Cytoplasm | |
HvHsp16.86-CI | AK376179 | Full | 456 | 151 | 16.86 | 5.79 | 3 | 2030 | Cytoplasm | |||
HvHsp17.5-CI | 35_14859 | AK250749 | HB18H23r_s_at | Full | 477 | 158 | 17.57 | 5.9 | 4 | 1785 | Cytoplasm | |
HvHsp16.7-CI | 35_14864 | AK252765 | Contig2010_at | Full | 453 | 150 | 16.76 | 5.46 | 4 | Cytoplasm | ||
HvHsp17.7-CI | 35_1486635_30931 | AK368988 | Contig2012_s_at | Full | 486 | 161 | 17.79 | 5.52 | 4 | 2068 | Cytoplasm | |
HvHsp17.3-CII | 35_15451 | AK375970 | Contig3284_x_at | Full | 480 | 159 | 17.33 | 6.05 | 3 | Cytoplasm | ||
HvHsp17.7-CII | 35_15454 | BF263847 | Contig3287_x_at | Full | 489 | 162 | 17.7 | 6.07 | 3 | 2446 | Cytoplasm | |
HvHsp-17.77CII | 35_15456 | AK355146 | Contig3289_at | Full | 489 | 162 | 17.77 | 6.41 | 3 | 1791 | Cytoplasm | |
HvHsp19.0-CIII | 35_18565 | AK360636 | Contig10029_at | Full | 537 | 178 | 19.05 | 6.92 | 3 | Cytoplasm | ||
HvHsp17.1-CV | 35_5795,35_27788 | AK373216 | Contig13073_at | Full | 468 | 155 | 17.14 | 6.69 | 1(92) | 2 | 2078 | Cytoplasm |
HvHsp17.76-CIX | 35_5001 | AK370196 | Contig11961_at | Full | 498 | 165 | 17.65 | 4.68 | 3 | Cytoplasm | ||
HvHsp19.2-CX | 35_5077 | AK370937 | Contig15445_at | Full | 534 | 177 | 19.26 | 7.53 | 6 | 2285 | Cytoplasm | |
HvHsp15.1-Px | AK365443 | Full | 417 | 138 | 15.14 | 8.48 | 4 | 2000 | peroxisome | |||
HvHsp21.9-ER | AK374148,AK374905 | Full | 618 | 205 | 21.97 | 6.64 | 6 | 2100 | endoplasmic reticulum | |||
HvHsp-ER | 35_31108 | BQ766746 | EBro08_SQ007_C01_at | Partial | 3 | |||||||
HvHsp21.3-MI | 35_16753,35_16752 | AK370932 | Contig6559_at | Full | 582 | 193 | 21.32 | 6.6 | 7 | mitochondria | ||
HvHsp26.8-P | 35_21394 | AK376976 | EBem05_SQ003_L06_at | Full | 735 | 244 | 26.8 | 6.1 | 1(102) | 4 | 763 | chloroplast |
HvHsp21.2 | 35_23844 | BF623486 | Contig21040_at | Full | 585 | 194 | 21.25 | 9.31 | 4 | |||
HvHsp | 35_42702 | CA005065 | HU11O14u_at | Partial | 1 |
The table shows the following details: Harvest unigene ID, full-length cDNA ID, Affymetrix ID, full-length/partial, open reading frame (ORF) size, predicted molecular mass for the deduced proteins, isoelectricpoint (pI), intron number with size, genomic sequence information (Assembly1 Morex ID), derived 5′ upstream of the translational start site and predicted subcellular localization.