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. 2014 Mar 5;9(3):e90830. doi: 10.1371/journal.pone.0090830

Table 3. Subgenome biased transcriptional regulators affected by mutation.

Class Identifier TAIR10 best hit TAIR 10 symbol AT biased (wtA/wtD) Li2A/wtA DT biased (wtD/wtA) Li2D/wtD
AP2/EREBP Gorai.006G222600 AT4G13620 3.78 0.35 0.26 1.47
AP2/EREBP Gorai.007G010200 AT5G52020 2.22 0.28 0.45 0.68
bHLH Gorai.007G005700 AT1G73830 BEE3 0.14 1.39 7.36 0.37
bHLH Gorai.006G115500 AT2G27230 LHW 2.71 2.45 0.37 2.87
bHLH Gorai.007G157700 AT3G07340 5.10 0.50 0.20 1.77
bHLH Gorai.001G275600 AT3G26744 ICE1,SCRM 5.82 0.22 0.17 0.64
bHLH Gorai.009G219100 AT4G33880 RSL2 0.37 1.53 2.68 0.31
C2C2(Zn) CO-like Gorai.009G065600 AT5G24930 COL4 2.38 2.17 0.42 2.23
C2H2(Zn) Gorai.009G092800 AT2G29660 3.56 0.40 0.28 0.77
C3H(Zn) Gorai.011G126400 AT5G51980 31.56 0.44 0.03 1.88
CPP(Zn) Gorai.013G121300 AT3G22780 TSO1 0.33 1.27 2.99 0.38
G2-like Gorai.008G224400 AT1G32240 KAN2 0.31 0.93 3.20 0.41
Homeobox Gorai.003G094500 AT3G01470 HAT5,HB-1 0.27 0.76 3.76 0.47
MYB Gorai.006G195700 AT4G22680 MYB85 12.21 0.31 0.08 0.56
MYB Gorai.001G015200 AT5G35550 MYB123,TT2 3.05 2.13 0.33 2.08
MYB Gorai.007G037100 AT5G62470 MYB96 4.72 2.30 0.21 5.78
WRKY Gorai.009G066900 AT4G31550 WRKY11 6.87 0.44 0.15 0.77
bZIP Gorai.013G258300 AT3G44460 DPBF2 0.27 0.78 3.68 0.37
AS2, LOB Gorai.013G016900 AT3G11090 LBD21 0.29 1.67 3.48 0.18
Aux/IAA Gorai.009G132300 AT3G15540 IAA19,MSG2 0.33 0.97 3.07 0.41
Aux/IAA Gorai.010G227800 AT3G15540 IAA19,MSG2 0.10 0.20 9.65 0.21
Aux/IAA Gorai.001G242900 AT3G23050 AXR2,IAA7 0.24 0.15 4.23 0.06
Aux/IAA Gorai.006G246000 AT4G14550 IAA14,SLR 4.08 0.28 0.24 0.43
Aux/IAA Gorai.001G043900 AT4G32280 IAA29 2.39 2.20 0.42 2.60
Aux/IAA Gorai.007G277000 AT5G43700 IAA4 0.19 0.32 5.28 0.25
General Gorai.011G240900 AT3G52270 3.94 0.40 0.25 0.40
GATA type (Zn) Gorai.005G230900 AT1G10200 WLIM1 3.86 0.30 0.26 0.62
TAZ domain Gorai.007G056400 AT5G67480 BT4 0.09 0.99 11.08 0.19
GRP Gorai.008G029100 AT4G39260 GRP8 3.23 0.47 0.31 0.74
unclassified Gorai.013G029900 AT2G01818 3.23 0.26 0.31 0.39
unclassified Gorai.013G258400 AT2G27580 2.85 0.38 0.35 0.82
unclassified Gorai.012G146800 AT3G18870 0.47 1.31 2.14 0.45
unclassified Gorai.008G221500 AT4G19050 2.08 2.23 0.48 2.01
unclassified Gorai.010G120300 AT5G10770 0.06 1.17 17.63 0.36
unclassified Gorai.004G118800 AT5G23750 2.79 0.48 0.36 0.47

The genes significantly (FDR corrected p-value <0.05) down-regulated or up- regulated more than 2-fold are shown in boldface and underlined.