Table 3.
Nucleotide and deduced amino acid identities of SH1211 compared with those of WUH4, QYYZ, HB-1(sh)/2002, JXA1, SY0608, MN184C, VR-2332, CH-1a, and LV (%).
| SH1211% | Identity to SH1211 | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| WUH4 | QYYZ | HB-1(sh)/2002 | JXA1 | SY0608 | MN184C | VR-2332 | CH-1a | LV | |
| Nucleotides (length) | |||||||||
| 5′UTR (188) | 96.8 | 92.6 | 93.6 | 96.8 | 96.3 | 88.9 | 91.0 | 94.2 | 53.3 |
| ORF1a (7422) | 96.1 | 82.0 | 93.0 | 96.0 | 96.1 | 76.5 | 84.7 | 90.8 | 53.2 |
| ORF1b (4383) | 94.8 | 89.0 | 93.9 | 94.9 | 94.9 | 86.4 | 89.9 | 92.8 | 63.0 |
| ORF2 (771) | 91.3 | 92.9 | 92.2 | 91.3 | 91.4 | 87.1 | 91.1 | 92.7 | 63.8 |
| ORF3 (759) | 94.9 | 88.7 | 92.9 | 95.2 | 95.6 | 84.7 | 87.3 | 92.9 | 61.5 |
| ORF4 (537) | 96.0 | 93.8 | 94.4 | 95.3 | 96.8 | 86.2 | 89.1 | 94.4 | 64.3 |
| ORF5 (603) | 83.9 | 92.8 | 84.4 | 84.4 | 84.4 | 85.0 | 84.5 | 85.5 | 59.0 |
| ORF6 (525) | 97.5 | 90.0 | 97.1 | 97.5 | 97.5 | 90.6 | 94.6 | 95.2 | 68.5 |
| ORF7 (372) | 96.7 | 87.9 | 96.2 | 97.0 | 96.7 | 90.0 | 92.2 | 94.8 | 61.5 |
| 3′UTR (150) | 98.0 | 84.9 | 94.7 | 98.0 | 97.3 | 90.7 | 54.9 | 94.7 | 55.9 |
| Complete (15,313) | 95.0 | 86.0 | 92.9 | 94.9 | 95.1 | 81.8 | 87.4 | 91.7 | 58.0 |
|
| |||||||||
| Amino acid (length) | |||||||||
| nsp1a (180) | 94.4 | 96.1 | 97.7 | 99.4 | 99.4 | 94.4 | 95.0 | 96.6 | 65.0 |
| nsp1b (203) | 92.6 | 81.2 | 90.6 | 92.6 | 91.6 | 75.8 | 80.2 | 84.2 | 39.7 |
| nsp2 (950) | 94.1 | 74.6 | 89.2 | 94.2 | 94.1 | 62.3 | 76.7 | 84.8 | 33.8 |
| nsp3 (446) | 97.6 | 90.0 | 96.9 | 98.0 | 98.0 | 93.0 | 95.3 | 98.0 | 56.1 |
| nsp4 (204) | 98.0 | 91.1 | 97.5 | 98.0 | 98.0 | 93.1 | 94.1 | 95.5 | 62.7 |
| nsp5 (170) | 98.2 | 84.9 | 98.2 | 98.2 | 97.6 | 85.8 | 92.3 | 94.7 | 71.1 |
| nsp6 (16) | 100 | 100 | 100 | 100 | 100 | 93.7 | 93.7 | 100 | 75.0 |
| nsp7 (259) | 98.0 | 94.5 | 95.7 | 98.4 | 98.4 | 84.9 | 88.4 | 95.3 | 43.7 |
| nsp8 (45) | 97.7 | 97.7 | 95.5 | 97.7 | 97.7 | 95.5 | 97.7 | 97.7 | 66.6 |
| nsp9 (643) | 98.3 | 98.3 | 96.7 | 97.3 | 97.7 | 96.0 | 97.8 | 98.1 | 75.9 |
| nsp10 (441) | 97.2 | 96.3 | 97.1 | 97.2 | 97.1 | 93.9 | 94.8 | 96.8 | 65.0 |
| nsp11 (223) | 98.6 | 95.5 | 96.8 | 98.2 | 98.2 | 94.6 | 96.4 | 97.7 | 76.3 |
| nsp12 (153) | 93.4 | 92.1 | 93.4 | 93.4 | 94.3 | 94.7 | 91.5 | 93.4 | 39.2 |
| GP2 (257) | 91.0 | 93.3 | 90.6 | 91.0 | 91.0 | 84.3 | 88.6 | 91.7 | 60.1 |
| E (74) | 90.5 | 95.9 | 90.5 | 90.5 | 90.5 | 93.2 | 93.2 | 90.5 | 70.2 |
| GP3 (253) | 92.5 | 85.4 | 89.3 | 93.3 | 94.0 | 85.0 | 85.8 | 89.3 | 53.0 |
| GP4 (179) | 95.5 | 94.3 | 97.1 | 94.3 | 97.7 | 89.3 | 89.3 | 97.1 | 69.3 |
| GP5 (201) | 84.5 | 94.0 | 84.5 | 85.0 | 84.5 | 85.0 | 82.5 | 85.5 | 52.6 |
| M (175) | 98.8 | 96.5 | 98.8 | 98.8 | 98.8 | 96.5 | 97.7 | 97.1 | 79.3 |
| N (124) | 97.5 | 91.0 | 95.9 | 97.5 | 96.7 | 91.0 | 93.4 | 94.3 | 58.0 |