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. 2014 Feb 4;106(3):548–555. doi: 10.1016/j.bpj.2013.11.4495

Table 2.

The K+ ion in the gate: two positions, plus the PVVV mutant: bond length and bond ordera

WT, ion at centerb
WT, ion 0.83 Å displacedc
PVVV mutante
PVPV
Bond lengthd Bond order Bond lengthd Bond order Bond lengthd Bond ordere 2nd shell Bond orderf
3.04 0.0184 3.31 0.056 2.98 0.121
2.75 0.024 2.81 −0.036 3.03 0.187
2.89g 0.157 2.84 0.135 xxxe xxx 0.133
2.82h 0.117 2.91 0.112 2.71 0.106 0.238
2.81 0.079 2.74 0.077 2.96 0.109 0.303
2.99 0.1349 2.86 0.165 2.77 −0.046

Water molecules here are ordered by position, from most extracellular to most intracellular.

a

NBO calculation from optimized structure with 48 waters, B3LYP/6-311G∗∗; total 693 atoms.

b

Center is defined as the position at the center of the near planar-square arrangement of the four nitrogens of the proline.

c

The ion is started at a position 1 Å to the side of the previous position; optimization returns it to 0.83 Å off center.

d

Bond length: K+ - O distance for the respective water molecules.

e

Water structure split into two separate domains, one above the ion, the other below; the last two water molecules in the table are not in the first shell of solvation.

f

These three first shell water molecules of the WT structure have a hydrogen with a competing strength hydrogen bond to a second shell water oxygen; those bond orders are shown in this column; bond lengths are in the 2.7 to 2.9 Å range.

g

Strongest bond order of this water with a nonhydrating water: 0.133.

h

Strongest bond order, this water to nonhydrating water, 0.238.