Table 2.
The K+ ion in the gate: two positions, plus the PVVV mutant: bond length and bond ordera
| WT, ion at centerb |
WT, ion 0.83 Å displacedc |
PVVV mutante |
PVPV |
|||
|---|---|---|---|---|---|---|
| Bond lengthd | Bond order | Bond lengthd | Bond order | Bond lengthd | Bond ordere | 2nd shell Bond orderf |
| 3.04 | 0.0184 | 3.31 | 0.056 | 2.98 | 0.121 | – |
| 2.75 | 0.024 | 2.81 | −0.036 | 3.03 | 0.187 | – |
| 2.89g | 0.157 | 2.84 | 0.135 | xxxe | xxx | 0.133 |
| 2.82h | 0.117 | 2.91 | 0.112 | 2.71 | 0.106 | 0.238 |
| 2.81 | 0.079 | 2.74 | 0.077 | 2.96 | 0.109 | 0.303 |
| 2.99 | 0.1349 | 2.86 | 0.165 | 2.77 | −0.046 | – |
Water molecules here are ordered by position, from most extracellular to most intracellular.
NBO calculation from optimized structure with 48 waters, B3LYP/6-311G∗∗; total 693 atoms.
Center is defined as the position at the center of the near planar-square arrangement of the four nitrogens of the proline.
The ion is started at a position 1 Å to the side of the previous position; optimization returns it to 0.83 Å off center.
Bond length: K+ - O distance for the respective water molecules.
Water structure split into two separate domains, one above the ion, the other below; the last two water molecules in the table are not in the first shell of solvation.
These three first shell water molecules of the WT structure have a hydrogen with a competing strength hydrogen bond to a second shell water oxygen; those bond orders are shown in this column; bond lengths are in the 2.7 to 2.9 Å range.
Strongest bond order of this water with a nonhydrating water: 0.133.
Strongest bond order, this water to nonhydrating water, 0.238.