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. 2014 Mar 6;10(3):e1003484. doi: 10.1371/journal.pcbi.1003484

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© 2014 Bung et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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A. Principal component 1 (Video S1) and B. Principal component 2 (Video S2) of the combined trajectory analysis from DPM to P6M stages. C. RMSF corresponding to the principal component 1 and 2 with domain demarcation along the abscissa. D. Dynamic Cross Correlation Map on the concatenated trajectory of all stages of simulation showing the correlation between the domain movements with the color bar at right indicating the intensity of correlation. Domain demarcations and the secondary structure elements (helix and sheet) are also shown along the axes.