Table 1. Yellow fever viral strains used for analytical specificity testing.
Virus description | Accession No. | Origin | Date | Lineage | real-time RT-PCR | RT-RPA | |
YFV virus strains | Ct values | real-time Tt [min] | LFS | ||||
ArD 24553 | _ | Senegal | 1976 | _ | 24,6 | 3,3 | n.d. |
ArD 408/78 | _ | Burkina Faso | 1978 | _ | 23,9 | 3,0 | n.d. |
HD 117294 | JX898868 | Senegal | 1995 | 6 | 16,5 | 2,3 | n.d. |
ArD 114891 | _ | Senegal | 1995 | 6 | 16,0 | 1,6 | n.d. |
ArD 99740 | _ | Senegal | 1993 | 3 | 25,0 | 5,1 | n.d. |
ArD 114991 | _ | Senegal | 1995 | _ | 24,3 | 3,4 | n.d. |
HD 122030 | _ | Senegal | 1996 | 6 | 19,4 | 2,4 | n.d. |
ArD 122522 | _ | Senegal | 1996 | 6 | 21,3 | 3,3 | n.d. |
HA 016/97 | _ | Liberia | 1997 | _ | 20,0 | 1,6 | n.d. |
HD 47471 | _ | Mauritania | 1987 | _ | 28,5 | 5,9 | n.d. |
ArD D X | _ | Senegal | 2000 | 5 | 21,4 | 2,4 | n.d. |
Asibi | AY640589.1 | Ghana | 1927 | _ | 20,6 | 3,2 | pos |
ArD 114896 | JX898871 | Senegal | 1995 | 3 | 20,3 | 3,1 | pos |
ArD 156468 | JX898876 | Senegal | 2001 | 4 | 16,8 | 2,4 | pos |
DakArAmt7 | JX898869 | Ivory Coast | 1973 | 1 | 15,4 | 2,1 | pos |
ArD 121040 | JX898870 | Senegal | 1996 | 6 | 16,4 | 2,3 | pos |
ArD 149214 | JX898873 | Senegal | 2000 | 5 | 15,5 | 2,2 | pos |
Ivory C 1999 | AY603338.1 | Ivory Coast | 1999 | 6 | 19,1 | 2,5 | pos |
Trinidad 79A 788379 | AF094612.1 | Brazil | 1979 | 3 | 20,1 | 2,5 | pos |
17D RKI #142/94/1 | Vaccine strain | RKI | _ | _ | 20,0 | 2,1 | pos |
n.d.: not determined; pos: positive; neg: negative; Tt: time threshold.