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. 2014 Mar 6;8(3):e2730. doi: 10.1371/journal.pntd.0002730

Table 1. Yellow fever viral strains used for analytical specificity testing.

Virus description Accession No. Origin Date Lineage real-time RT-PCR RT-RPA
YFV virus strains Ct values real-time Tt [min] LFS
ArD 24553 _ Senegal 1976 _ 24,6 3,3 n.d.
ArD 408/78 _ Burkina Faso 1978 _ 23,9 3,0 n.d.
HD 117294 JX898868 Senegal 1995 6 16,5 2,3 n.d.
ArD 114891 _ Senegal 1995 6 16,0 1,6 n.d.
ArD 99740 _ Senegal 1993 3 25,0 5,1 n.d.
ArD 114991 _ Senegal 1995 _ 24,3 3,4 n.d.
HD 122030 _ Senegal 1996 6 19,4 2,4 n.d.
ArD 122522 _ Senegal 1996 6 21,3 3,3 n.d.
HA 016/97 _ Liberia 1997 _ 20,0 1,6 n.d.
HD 47471 _ Mauritania 1987 _ 28,5 5,9 n.d.
ArD D X _ Senegal 2000 5 21,4 2,4 n.d.
Asibi AY640589.1 Ghana 1927 _ 20,6 3,2 pos
ArD 114896 JX898871 Senegal 1995 3 20,3 3,1 pos
ArD 156468 JX898876 Senegal 2001 4 16,8 2,4 pos
DakArAmt7 JX898869 Ivory Coast 1973 1 15,4 2,1 pos
ArD 121040 JX898870 Senegal 1996 6 16,4 2,3 pos
ArD 149214 JX898873 Senegal 2000 5 15,5 2,2 pos
Ivory C 1999 AY603338.1 Ivory Coast 1999 6 19,1 2,5 pos
Trinidad 79A 788379 AF094612.1 Brazil 1979 3 20,1 2,5 pos
17D RKI #142/94/1 Vaccine strain RKI _ _ 20,0 2,1 pos

n.d.: not determined; pos: positive; neg: negative; Tt: time threshold.