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. 2014 Jan 21;289(10):7232–7246. doi: 10.1074/jbc.M113.525915

TABLE 5.

MM-GBSA binding energies of arginine or lysine and their main contributions in wild-type Can1 and variants taking two different rotamers for each mutated residue

Total Coulomb term Hydrogen term Solvation term Van der Waals term
kcal/mol kcal/mol kcal/mol kcal/mol kcal/mol

Arginine binding
    Wild type −79.1 3.3 −5.5 −27.1 −32.0
    S176N −69.9 −7.8 −4.8 −14.9 −30.8
    S176N −65.9 3.3 −3.1 −19.0 −25.4
    T456S −77.1 2.2 −5.2 −24.6 −31.3
    T456S −76.3 0.9 −4.8 −21.7 −32.3
    S176N/T456S −61.3 7.8 −2.1 −25.8 −32.4
    S176N/T456S −64.9 −1.7 −2.2 −18.5 −33.9
    S176N/T456S −60.3 8.7 −2.1 −26.0 −32.1
    S176N/T456S −61.2 1.3 −2.0 −17.6 −34.0

Lysine binding
    Wild type −45.7 −10.8 −1.8 15.1 −31.1
    S176N −45.6 −11.3 −1.9 16.3 −31.7
    S176N −45.0 −5.4 −1.8 10.5 −31.1
    T456S −45.2 −7.9 −1.8 12.8 −31.4
    T456S −42.7 −5.1 −1.6 12.7 −31.8
    T456S-wat −45.1 −12.9 −2.0 15.9 −29.3
    T456S-wat −46.1 −13.4 −2.0 15.2 −29.2
    T456S-wat −44.4 −13.4 −2.0 16.5 −28.8
    S176N/T456S −46.1 −10.4 −1.8 14.4 −31.4
    S176N/T456S −44.5 −5.2 −1.9 10.2 −30.7
    S176N/T456S −44.8 −8.4 −1.7 13.8 −31.7
    S176N/T456S −44.3 −3.0 −1.8 8.5 −31.1