Table 2. Top DMPs identified in PSP vs. controls, after filtering for an adjusted p-value ≤0.05, and an absolute average beta difference (aβD)≥0.1.
Probe ID | aβD | aMeth | P-value | Adjusted P-value | Gene | Position | Probe Type |
cg03865648 | −0.105 | 0.286 | 3.37×10−5 | 0.007 | / | chr3:173113856 | N_Shore |
cg09580153 | −0.100 | 0.920 | 4.55×10−5 | 0.008 | NFYA | chr6:41068724 | Island |
cg12000995 | −0.109 | 0.535 | 5.23×10−5 | 0.009 | KRTCAP3 | chr2:27665139 | Island |
cg03644281 | −0.105 | 0.916 | 8.78×10−5 | 0.012 | NFYA | chr6:41068752 | Island |
cg04346459 | −0.131 | 0.876 | 9.03×10−5 | 0.012 | NFYA | chr6:41068666 | Island |
cg03428951 | −0.133 | 0.588 | 1.16×10−4 | 0.014 | FAM153C | chr5:177434336 | S_Shore |
cg25110423 | −0.112 | 0.848 | 1.23×10−4 | 0.015 | NFYA | chr6:41068646 | Island |
cg23758822 | 0.105 | 0.205 | 1.74×10−4 | 0.018 | / | chr17:41437982 | N_Shore |
cg22968622 | −0.127 | 0.160 | 1.85×10−4 | 0.019 | / | chr17:43663579 | Island |
cg22295435 | 0.140 | 0.564 | 1.95×10−4 | 0.019 | VSTM2A | chr7:54615864 | S_Shore |
cg21819782 | −0.133 | 0.294 | 3.89×10−4 | 0.028 | / | chr2:62609317 | NA |
cg12609785 | −0.103 | 0.129 | 4.10×10−4 | 0.029 | / | chr17:43660871 | N_Shore |
cg24401049 | −0.102 | 0.578 | 7.21×10−4 | 0.040 | ARHGAP6 | chrX:11157158 | Island |
cg12289251 | −0.106 | 0.389 | 8.08×10−4 | 0.043 | CACNB2 | chr10:18689471 | NA |
ID: Illumina probe ID; aβD: average beta difference, aMeth: average Methylation level. In bold are probes located within the 17q21.31 region.