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. 2014 Mar 6;10(3):e1004211. doi: 10.1371/journal.pgen.1004211

Table 2. Top DMPs identified in PSP vs. controls, after filtering for an adjusted p-value ≤0.05, and an absolute average beta difference (aβD)≥0.1.

Probe ID aβD aMeth P-value Adjusted P-value Gene Position Probe Type
cg03865648 −0.105 0.286 3.37×10−5 0.007 / chr3:173113856 N_Shore
cg09580153 −0.100 0.920 4.55×10−5 0.008 NFYA chr6:41068724 Island
cg12000995 −0.109 0.535 5.23×10−5 0.009 KRTCAP3 chr2:27665139 Island
cg03644281 −0.105 0.916 8.78×10−5 0.012 NFYA chr6:41068752 Island
cg04346459 −0.131 0.876 9.03×10−5 0.012 NFYA chr6:41068666 Island
cg03428951 −0.133 0.588 1.16×10−4 0.014 FAM153C chr5:177434336 S_Shore
cg25110423 −0.112 0.848 1.23×10−4 0.015 NFYA chr6:41068646 Island
cg23758822 0.105 0.205 1.74×10−4 0.018 / chr17:41437982 N_Shore
cg22968622 −0.127 0.160 1.85×10−4 0.019 / chr17:43663579 Island
cg22295435 0.140 0.564 1.95×10−4 0.019 VSTM2A chr7:54615864 S_Shore
cg21819782 −0.133 0.294 3.89×10−4 0.028 / chr2:62609317 NA
cg12609785 −0.103 0.129 4.10×10−4 0.029 / chr17:43660871 N_Shore
cg24401049 −0.102 0.578 7.21×10−4 0.040 ARHGAP6 chrX:11157158 Island
cg12289251 −0.106 0.389 8.08×10−4 0.043 CACNB2 chr10:18689471 NA

ID: Illumina probe ID; aβD: average beta difference, aMeth: average Methylation level. In bold are probes located within the 17q21.31 region.