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. 2014 Mar 6;2014:bau013. doi: 10.1093/database/bau013

Figure 3.

Figure 3.

Example of a protein sequence data set. (A) Partial view of the page giving access to cellular BCL-2 homologous protein data sets. The table lists available data sets for the diverse species and proteins in the BCL-2-like clade. The user can access sequences in Fasta/Pearson format (F letter), multiple sequence alignment in Clustal W format (C letter) and residue repertoire (R letter). (B) The Fasta/Pearson file for Homo sapiens BCL-2 protein sequences. The sequence identifiers are built with the primary accession number, the protein name and an isoform number. A link is provided on sequence identifier to view the BCL2DB entry (Figure 2B). (C) The multiple sequence alignment computed with MUSCLE and displayed in Clustal W format. The color code used is red, green, black for residues that are conserved, strongly similar, weakly similar and variable in the alignment column, respectively, as defined by Clustal W. Dashes indicate gaps. (D) Residue repertoire computed from the previous alignment with the same color code.