Table 4. Methylation of amplicons of rat genes compared to homologues regions of the human genome.
% DNA methylation Rat | % DNA methylation human | Location of rat amplicons in human genome (Build 37) | Location Illumina probes (Build 37) | Accession Number Rat | Accession Number Human | ||
High DNA methylation | Crcp | 91.0±2.5 | 86.0±5.8 | 7:65587384–7:65587475 | 7:65583242–7:65604635 | NM_053670.3 | NM_014478.4 |
Gper1 | 93.4±1.7 | 98.3±0.8 | 7:1131643–7:1132074 | 7:1132036 | NM_133573.1 | NM_001505.2 | |
Low DNA methylation | Calca | 4.2±1.6 | 30.0±3.8 | 11:14993934–11:14994000 | 11:14993929–11:14293977 | NM_017338.2 | NM_001741.2 |
Calcrl | 2.9±2.2 | 20.8±5.7 | 2:188312541 | 2:188312833 | NM_012717.1 | NM_005795.5 | |
Esr1 | 3.4±0.9 | 6.1±2.3 | 6:152129135–6:152129504 | 6:152129388–6:152129400 | NM_012689.1 | NM_000125.3 | |
Mthfr | 2.0±0.6 | 1.8±1.0 | 1:11866155–1:11866365 | 1:11866155–1:11866236 | NM_005957.4 | XM_001074061.4 | |
Nos3 | 23±14.6 | 19.7±4.3 | 7:150710828–7:10571127 | 7:150710730–7:150711138 | NM_021838.2 | NM_000603.4 | |
Ramp1 | 2.8±0.8 | 6.1±2.3 | 2:238768163–2:238768240 | 2:238768104–2:238828641 | NM_031645.1 | NM_005855.2 | |
Usf2 | 1.7±0.6 | 6.8±2.3 | 19:345760455–19:35760666 | 19:35760554 | NM_031139.1 | NM_003367.2 |