Table 1.

Details of SNPs utilized for M, S and hybrid characterization. Additional sequence and primer design data provided in Supplemental Table S1.

SNP ID	Chrom.	genome coordinate	SNP	M genotype	S genotype	reference
28S-IGS-540	X	24,391,149	T/C	TT	CC	Favia et al. 1997, Fanello et al. 2002
28S-IGS-649	X	24,391,258	A/T	AA	TT	Gentile et al. 2002
01076-129	X	22,944,682	T/G	TT	GG	Stump et al. 2005
01073-073	X	22,750,572	G/T	GG	TT	Stump et al. 2005
01073-213	X	22,750,432	G/A	GG	AA	Stump et al. 2005
01070-211	X	22,497,157	A/G	AA	GG	Turner et al. 2005
01061-057	X	22,105,860	T/C	TT	CC	Stump et al. 2005
01061-488	X	22,10,5429	A/T	AA	TT	Stump et al. 2005
01039-358	X	20,015,634	C/A	CC	AA	Stump et al. 2005
04679-157	2L	209,536	C/T	CC	TT	White et al. 2010
04691-107	2L	1,274,353	A/G	AA	GG	Turner& Hahn 2007; Turner et al. 2005
04707-118	2L	2,430,786	C/T	CC	TT	Turner et al. 2005
04707-247	2L	2,430,915	A/G	AA	GG	Turner et al. 2005
04707-337	2L	2,431,005	C/T	CC	TT	Turner et al. 2005
10313-052	3L	296,897	G/A	GG	AA	White et al. 2010
10315-679	3L	387,877	G/A	GG	AA	White et al. 2010
10317-546	3L	413,944	T/C	TT	CC	White et al. 2010