Table 1.

Potentially deleted genes according to copy number (CNV), transcript level (abundance [reads per kilobase per million reads (RPKM)] and regulation [log₂FC]), and median protein staining level in malignant and healthy renal tissue

Gene	Gene locus	Mean CNV amplitude	CNV frequency (%)	RPKM	log2FC	Median staining renal cancers	Staining kidney cells in tubules	Enzymatic activity
ABHD5	3p21.31	−0.236	81.15	2.69	−0.94	Negative	Moderate	1-acylglycerol-3-phosphate O-acyltransferase
CHDH	3p21.1	−0.227	78.28	9.54	−1.05	Negative	Strong	Choline dehydrogenase
GPD1L	3p22.3	−0.234	80.94	4.96	−0.83	Negative	Moderate	Glycerol-3-phosphate dehydrogenase
IMPDH2	3p21.31	−0.236	81.15	8.19	−0.68	Negative	Moderate	IMP dehydrogenase
PDHB	3p14.3	−0.216	74.80	4.35	−1.30	Negative	Strong	Pyruvate dehydrogenase