FIG. 3.

Estimation of IBD transition locations along chromosomes. Lefthand panels (A) and (C) show inferred cumulative transition frequency (black), true cumulative transition frequency (magenta), and the prior expectation (dashed cyan line) for S-NoLD and L-NoLD, respectively. Righthand panels (B) and (D) contrast results from data sets without LD (gray lines) and with LD (black lines) for short and long data sets, respectively. Residual frequency is defined as the inferred frequency minus the true frequency, so that a residual frequency of 0.0 represents perfect recovery. Short vertical lines on the top of each panel indicate the true transition locations.