FIG. 6.

JointIBD versus ibd_haplo. Comparisons of JointIBD estimates (black lines) to the pairwise estimates (cyan lines) obtained by ibd_haplo from the data sets L-NoLD (left panels) and L-LD (right panels). Magenta lines denote the true values. (A) and (B) show the number of pairs inferred to have any IBD. (C) and (D) show the counts of false IBD calls (false positives), and (E) and (F) show the counts of false no-IBD calls (false negatives). “No IBD” refers to the IBD state consisting of four singletons; all other IBD states for two individuals are grouped as “any IBD.”