Table 2.
PEPT1-related nucleotide sequences in teleost fish available in GenBank (annotated) or derived by computational analysis (predicted)
| Description | Species | GenBank Acc. No. | Functional expression | Reference (listed by year of publication) |
|---|---|---|---|---|
| mRNA, complete cds (annotated) | ||||
| PEPT1B | Zebrafish (Danio rerio) | NM_198064.1 | Yes | Verri et al. 1993a |
| PEPT1B | Atlantic cod (Gadus morhua) | AY921634.1 | No | Rønnestad et al. 2013 |
| PEPT1A | China rockfish (Sebastes nebulosus) | EU160494.1 | No | GenBank submissiona |
| PEPT1B | European sea bass (Dicentrarchus labrax) | FJ237043.2 | Yes | Terova et al. 2005; Sangaletti et al. 2008 |
| PEPT1B | Atlantic salmon (Salmo salar) | NM_001146682.1 | Yes | Rønnestad et al. 1998 |
| PEPT1A | Zebrafish (Danio rerio) | XM_001919879.3 | No | GenBank submissionb |
| PEPT1B | Common carp (Cyprinus carpio) | JN896885.1 | No | GenBank submissionc |
| PEPT1A | Mummichog (Fundulus heteroclitus macrolepidotus) | JN615008.1 | No | Bucking & Schulte 2009 |
| PEPT1B | Mummichog (Fundulus heteroclitus macrolepidotus) | JN615007.1 | No | Bucking & Schulte 2009 |
| PEPT1B | Yellow perch (Perca flavescens) | GQ906471.2 | No | Kwasek et al. 2012 |
| PEPT1B | Red crucian carp (Carassius auratus red var.) | JQ411137.1 | No | GenBank submissiond |
| PEPT1B | Tetraploid hybrids of red crucian carp and common carp (Carassius auratus x Cyprinus carpio) | JQ411139.1 | No | GenBank submissiond |
| PEPT1B | Triploid hybrids of tetraploid hybrids of red crucian carp and common carp and Japanese crucian carp (Carassius auratus x Cyprinus carpio x Carassius cuvieri) | JQ411138.1 | No | GenBank submissiond |
| PEPT1B | White grouper (Epinephelus aeneus) | JX122768.1 | No | GenBank submissione |
| PEPT1A | Japanese eel (Anguilla japonica) | AB762417.1 | No | GenBank submissionf |
| PEPT1B | Grass carp (Ctenopharyngodon idella) | JN088166.1 | No | Liu et al. 2012 |
| PEPT1B | Antarctic icefish (Chionodraco hamatus) | AY170828.2 | Yes | Rizzello et al. 2011 |
| mRNA, complete cds (predicted) | ||||
| PEPT1B | Torafugu (Takifugu rubripes) | – | – | Tiziano Verri, unpublished datag |
| PEPT1B | Japanese medaka (Oryzias latipes) | – | – | Tiziano Verri, unpublished datag |
| PEPT1B | Southern platyfish (Xiphophorus maculatus) | – | – | Tiziano Verri, unpublished datag |
| PEPT1B | Spotted green pufferfish (Tetraodon nigroviridis) | – | – | Tiziano Verri, unpublished datag |
| PEPT1B | Three-spined stickleback (Gasteosteus aculeatus) | – | – | Tiziano Verri, unpublished datag |
| PEPT1A | Atlantic cod (Gadus morhua) | – | – | Tiziano Verri, unpublished datag |
| PEPT1A | Torafugu (Takifugu rubripes) | – | – | Tiziano Verri, unpublished datag |
| PEPT1A | Japanese medaka (Oryzias latipes) | – | – | Tiziano Verri, unpublished datag |
| PEPT1A | Nile tilapia (Oreochromis niloticus) | – | – | Tiziano Verri, unpublished datag |
| PEPT1A | Southern platyfish (Xiphophorus maculatus) | – | – | Tiziano Verri, unpublished datag |
| PEPT1A | Three-spined stickleback (Gasteosteus aculeatus) | – | – | Tiziano Verri, unpublished datag |
cds, coding sequence.
Amberg JJ, Anderson CL, Hill RA, Rust MB & Hardy RW. Submitted (17-SEP-2007) Aquaculture Research Institute, University of Idaho, Hagerman, Idaho, USA;
Record predicted by automated computational analysis (this record is derived from a genomic sequence NW_003039818 annotated using the gene prediction method GNOMON). Submitted (23-MAR-2011) NCBI Annotation staff;
Nie GX, Yan X, Wang JL, Ming H, Wang B, Zheng JL, Li XJ & Kong XH. Submitted (24-OCT-2011) College of Life Sciences, Henan Normal University, Xinxiang, Henan, China;
Liu Z, Feng JC, Liu SJ & Liu Y. Submitted (14-JAN-2012) College Life Science, Hunan Normal University, Changsha, Hunan, China;
Terova G, Preziosa E, Gliozheni E & Rimoldi S. Submitted (31-MAY-2012) Biotechnology and Molecular Sciences, University of Insubria, Varese, Italy;
Ahn H, Watanabe S, Yamada Y, Tsukamoto K & Kaneko T. Submitted (15-NOV-2012) The University of Tokyo, Graduate School of Agricultural and Life Sciences, Tokyo, Japan;
mRNA, complete cds predicted by computational analysis using nucleotide (genomic, partial mRNA, EST, etc.) sequences stored in GenBank and Ensembl (for reference see Bucking & Schulte, 2009; Liu et al. 2012) in combination with a variety of prediction and annotation methods (GenScan, GenomeScan, FGenesh, Artemis, direct alignment, etc.).