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. 2013 Jun 14;2(4):595–609. doi: 10.1002/mbo3.94

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© 2013 The Authors. Microbiology Open published by John Wiley & Sons Ltd.

This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

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Hierarchical clustering of orthologous and paralogous genes induced by exposure to Avicel in N. crassa and A. nidulans. (A) Hierarchical clusters of FPKM for ortholog pairs (O1-O10) for which at least one member passed criteria for specific induction under either Avicel [A] or no carbon source [N] conditions. A.n. = Aspergillus nidulans; N.c. = Neurospora crassa. (B) Hierarchical clusters of FPKM for paralogous pairs (P1-P6) of genes induced under Avicel [A] or no carbon source [N] conditions (see methods for details on paralog selection). Heat maps display log (FPKM) scaled from 1 (bright blue) to the maximal value for each pair (bright yellow). CAZy genes in each cluster are marked with small arrows and listed in order to the right of each cluster.