Table 4. Summary of interspersed repeats from homology-based identification.
| Full-length | All repeats | |||||||
|---|---|---|---|---|---|---|---|---|
| Class | Order | Superfamily | No. of elements | Length (bp) | % genome | No. of elements | Length (bp) | % genome |
| I | LTR | Gypsy | 49,183 | 264,644,712 | 1.14 | 5,127,514 | 2,544,140,822 | 10.98 |
| I | LTR | Copia | 36,952 | 207,086,169 | 0.89 | 4,385,545 | 2,119,375,506 | 9.14 |
| Total LTR | LTR | 179,367 | 962,249,326 | 4.15 | 17,432,917 | 9,660,836,674 | 41.68 | |
| I | DIRS (Dictyostelium transposable element) | 4,935 | 26,820,856 | 0.12 | 596,008 | 335,540,558 | 1.45 | |
| I | Penelope | 4,966 | 13,456,930 | 0.06 | 422,276 | 188,350,501 | 0.81 | |
| I | LINE | 15,353 | 53,411,263 | 0.23 | 906,403 | 545,648,705 | 2.35 | |
| I | SINE | 137 | 68,023 | 0.00 | 670 | 182,264 | 0.00 | |
| Total RT(Retrotransposon) | 262,028 | 1,299,761,701 | 5.61 | 25,166,637 | 13,577,984,814 | 58.58 | ||
| II | TIR | 7,932 | 20,499,522 | 0.09 | 420,769 | 185,871,618 | 0.80 | |
| II | Helitron | 1,105 | 3,500,491 | 0.02 | 47,003 | 22,396,711 | 0.10 | |
| Total DNA | 11,026 | 31,035,610 | 0.13 | 519,708 | 240,545,369 | 1.04 | ||
| Uncategorized | 56,024 | 110,604,852 | 0.48 | 3,164,894 | 1,172,394,606 | 5.06 | ||
| Total interspersed | 336,037 | 1,458,952,566 | 6.29 | 29,249,206 | 15,145,555,948 | 65.34 | ||
| Tandem repeats | 210,810,342 | 0.91 | 210,810,342 | 0.91 | ||||
| Total | 1,669,762,908 | 7.20 | 15,356,366,290 | 66.25 | ||||