Table 2.
Identification of motifs over-represented in 500 bp and 1 kb-upstream regions of PDF1s responding to MeJA.
| Identification | Sequencea | Nb Occb | P-value |
|---|---|---|---|
| HV chs-Unit_1_m1 | ACCTAACCCGC | 4c | 0.006 |
| LE L-box | AGATTAACCAAC | 4d | 0.01 |
| AT CAG motif | GAAAGGCAGAC | 4e | 0.026 |
| AS GT1 motif | GGTTAAT | 4 | 0.04 |
a
As indicated in the annotation file of MotifScaner file.
b
Number of occurrences.
c
Variations in these motifs are identified as “ACCTAAGCGGC” in AtPDF1.2a, AtPDF1.2b and AhPDF1.2b and “ACCAGCCCCGC” in AtPDF1.2c.
d
Variations in these motifs are identified as “AGATTAACCAGC” in all four JA-responsive PDF1s, i.e.: AtPDF1.2a, AtPDF1.2b, AtPDF1.3, and AhPDF1.2b.
e
Variations in these motifs are identified as “GAAGGTCAGAC” in AtPDF1.2a, AtPDF1.2b and AhPDF1.2b and “GAAAGGCTGCC” in AtPDF1.2c.