Table 1.

Overview of samples, read coverages and detected aberrations

The samples with a gray background are the 17 samples used to build the set of reference bins. Samples with green text indicate samples in which the positions of a called copy number change correspond with the karyotyping analysis of CVS or AF (true positives). Samples with no position information denote samples for which no copy number change was detected by WISECONDOR or by karyotyping (true negatives). Samples with red text in the position columns indicate falsely called genomic regions (false positives), while red text in the karyotype column marks a missed aberrated region (false negative). A percentage in the aneuploidy column indicates the sample was called aneuploid, and the percentage shown is the amount of bins found deviating. The column denoted as Mult contains the average multiplication compared to the expected values for bins in the called region. No results <10 Mb are shown in this table. The rightmost column indicates the karyotyping based on CBS or AF.