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Characteristics of UDS Reads Generated for Each HIV-1 Coding Region
| Coding Region | No. of Reads: Median (IQR) | Read Length: Mean (IQR) | Nucleotide Coverage: Median (IQR) |
|---|---|---|---|
| env (C2-V3) | 3877 (1771–6417) | 296 (269–329) | 2032 (944–3492) |
| gag (p24) | 8263 (3189–12 911) | 233 (226–244) | 3018 (1093–4927) |
| pol (RT) | 4268 (1911–8082) | 223 (194–242) | 1320 (603–2619) |
Abbreviations: HIV-1, human immunodeficiency virus type 1; IQR, interquartile range; RT, reverse transcriptase; UDS, ultradeep sequencing.
