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. 2014 Mar 13;9(3):e91016. doi: 10.1371/journal.pone.0091016

Table 6. List of the most remarkable annotated sequences in three QTL zones of interest, one on LG9 and two on LG10.

Category Query ID ScaffoldID TranscriptStart TranscriptLength Match ID Organism Description PercentIdentity E-value Nb ofcopiesin QTLzone Total nbof copies inreferencegenome
TF MDP0000366019 chr9 4405214 4745 AT3G02310.1 At SEP2 (SEPALLATA 2); DNA binding/protein binding/transcription factor 65,02 2E-66 2 4
MDP0000605482 chr9 4411551 3918 AT5G15800.1 At SEP1 (SEPALLATA1); DNA binding/ transcription factor 82,19 7E-66 2 9
MDP0000126997 chr9 5235116 451 AT2G03710.3 At SEP4 (SEPALLATA 4); DNA binding/ transcription factor 90,16 3E-28 1 7
MDP0000132738 chr9 4444708 561 AT5G60910.1 At AGL8 (agamous-like 8); transcription factor 86,15 5E-27 1 5
MDP0000143531 chr9 4509598 942 AT4G24540.1 At AGL24 (AGAMOUS- LIKE 24); protein binding/proteinheterodimerization/ protein homodimerization/ sequence-specific DNA binding/transcription factor 67,21 2E-17 2 12
MDP0000132959 chr9 5348078 546 AT2G37630.1 At AS1 (ASYMMETRIC LEAVES 1); DNA binding/protein homodimerization/ transcription factor 64,1 7,00E-08 1 3
MDP0000154734 chr9 677443 2714 AT5G13080.1 At WRKY75; transcription factor 72,28 6E-39 2 7
Senescence MDP0000633623 chr9 2246213 5883 AT5G14930.2 At SAG101 (SENESCENCE- ASSOCIATED GENE 101); carboxylesterase/ triacylglycerol lipase 33,77 5E-73 7 18
MDP0000187883 chr9 4656219 1005 AT5G15720.1 At GLIP7; carboxylesterase/ lipase 38,08 5E-42 3 4
Glycosyl-transferases MDP0000822876 chr9 1451274 1459 AT3G27540.1 At glycosyl transferase family 17 protein 74,25 3E-167 2 3
Cellulosesynthases& Galacturonases MDP0000314103 chr9 1496070 6493 AT5G05170.1 At CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/transferase, transferring glycosyl groups 84,92 0 2 8
MDP0000183140 chr9 2214322 2799 AT3G28180.1 At ATCSLC04 (CELLULOSE- SYNTHASE LIKE C4); cellulose synthase/ transferase, transferring glycosyl groups 75,36 0 2 4
MDP0000932170 chr9 2653142 1037 AT5G15050.1 At glycosyltransferase family 14 protein/ core-2/I-branching enzyme family protein 71,7 5E-95 2 7
MDP0000517518 chr9 2794153 2049 AT5G15870.1 At glycosyl hydrolase family 81 protein 61,64 0 1 7
MDP0000283839 chr9 3215719 4003 AT3G01180.1 At AtSS2 (starch synthase 2); transferase, transferring glycosyl groups 65,59 0 1 2
MDP0000152152 chr9 3802610 3365 AT5G15470.1 At GAUT14 (Galacturonosyltransferase 14); polygalacturonate 4-alpha- galacturonosyltransferase/ transferase, transferring glycosyl groups/ transferase, transferring hexosyl groups 85,85 0 2 3
MDP0000298545 chr9 4082535 612 AT3G02120.1 At hydroxyproline-rich glycoprotein family protein 64,44 2E-11 1 3
MDP0000394728 chr9 4386339 2317 AT5G15650.1 At RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups 88,99 0 1 2
MDP0000364776 chr9 4765572 502 AT3G02350.1 At GAUT9 (Galacturonosyltransferase 9); polygalacturonate 4-alpha- galacturonosyltransferase/ transferase, transferring glycosyl groups/ transferase, transferring hexosyl groups 61,64 2E-13 2 3
MDP0000148377 chr9 5010079 2076 AT5G15870.1 At glycosyl hydrolase family 81 protein 71,56 0 1 7
Auxintransport MDP0000286938 chr9 2484954 1708 AT3G28390.1 At PGP18 (P- GLYCOPROTEIN 18); ATPase, coupled to transmembrane movement of substances 68,21 8E-39 1 9
MDP0000592047 chr9 2487928 1309 AT3G28380.1 At PGP17 (P- GLYCOPROTEIN 17); ATP binding/ATPase /ATPase, coupled to transmembrane movement of substances/nucleoside- triphosphatase/ nucleotide binding 64,1 2E-65 2 2
MDP0000320690 chr9 3021773 6858 AT3G28860.1 At ABCB19; ATPase, coupled to transmembrane movement of substances /auxin efflux transmembrane transporter 83,59 0 2 7
MDP0000283840 chr9 3220552 2738 AT3G28970.1 At AAR3 (antiauxin- resistant 3) 53,01 1E-80 1 2
Expansines MDP0000432497 chr9 3249924 1097 AT2G03090.1 At ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) 77,73 4E-87 2 3
MDP0000679320 chr9 3952913 354 AT5G39300.1 At ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25) 45,24 1E-24 2 5
TF MDP0000157175 chr10 5206681 201 AT1G22380.1 At AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase /transcription factor/transferase, transferring glycosyl groups 41,79 2,00E-08 1 20
MDP0000169115 chr10 5639948 1416 AT2G04890.1 At SCL21 (SCARECROW-LIKE 21); transcription factor 32,99 1E-41 2 3
MDP0000849944 chr10 5899220 1531 AT1G71930.1 At VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7); transcription activator/transcription factor/transcription regulator 55,76 7E-88 1 6
MDP0000913269 chr10 5837731 687 AT3G60390.1 At HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3); transcription factor 80,77 6E-17 1 5
Senescence MDP0000086659 chr10 5652509 1129 AT5G45890.1 At SAG12 (SENESCENCE-ASSOCIATED GENE 12); cysteine-type peptidase 57,73 4E-112 1 28
Glycosyl_hydrolases& sucrosetransporters MDP0000234500 chr10 6131258 762 AT1G30080.1 At glycosyl hydrolase family 17 protein 45,57 8E-14 1 4
MDP0000129284 chr10 6395682 1164 AT1G78800.1 At glycosyl transferase family 1 protein 52,03 2E-29 3 11
MDP0000137383 chr10 5601556 1507 AT1G71880.1 At SUC1 (Sucrose-proton symporter 1); carbohydrate transmembrane transporter/sucrose:hydrogen symporter/sugar: hydrogen symporter 64,68 5E-141 1 3
MDP0000774366 chr10 5610911 559 AT1G22710.1 At SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transmembrane transporter/sucrose transmembrane transporter/sucrose:hydrogen symporter/sugar: hydrogen symporter 77,01 2E-27 2 6
TF MDP0000162468 chr10 26355418 1416 AT2G04890.1 At SCL21 (SCARECROW-LIKE 21); transcription factor 32,99 1E-41 1 3
MDP0000324166 chr10 26500109 7258 AT4G18960.1 At AG (AGAMOUS); DNA binding/transcription factor 70,52 8E-99 1 3
MDP0000582861 chr10 26774460 2108 AT1G71692.1 At AGL12 (AGAMOUS-LIKE 12); transcription factor 38,1 8,00E-08 2 4
MDP0000133918 chr10 27085544 1225 AT1G29280.1 At WRKY65; transcription factor 52,23 7E-59 1 3
MDP0000285490 chr10 27135441 2177 AT1G62360.1 At STM (SHOOT MERISTEMLESS); transcription factor 79,09 2E-38 1 5
Trehalose &cellulosesynthases MDP0000227381 chr10 26448598 5975 AT1G78580.1 At ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); alpha,alpha-trehalose-phosphate synthase (UDP-forming)/transferase, transferring glycosyl groups 72,53 0 1 10
MDP0000265728 chr10 27049737 3142 AT1G06410.1 At ATTPS7; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/transferase, transferring glycosyl groups/trehalose-phosphatase 76,46 0 1 8
MDP0000214413 chr10 27203159 5378 AT4G18780.1 At IRX1 (IRREGULAR XYLEM 1); cellulose synthase/transferase, transferring glycosyl groups 81,95 0 2 9