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LC/MS analysis of protein Epsilon after ClpXP protease degradation. The table represents a list of identified peptides and respective Mascot scores. For clarity, duplicate peptides were removed. The same data are presented as percentages of peptides with certain C-terminal amino acid. Protease preferably hydrolyzes peptide bond following leucine and asparagine residues. This tendency, however, is not very specific, because other sites are also cleaved.
