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| Property | canFam2.0 | canFam3.1 |
| Coverage of euchromatic portion of genome (%) | 99.2 | 99.6 |
| Portion of assembly in “certified regions” (%) | 99.5 | 99.8 |
| Contiguity: gaps per Mb | 12 | 6 |
| ENCODE regions | High-quality draft | 98% Finished |
