Table 3.
List of representative genes up-regulated in acl5-1 seedlings.
| Functional category | AGI Code | Annotation | Fold change ± SE |
|---|---|---|---|
| Polyamine metabolism | At5g18930 | S-adenosylmethionine decarboxylase 4 (SAMDC4/BUD2) | 21.3±2.4 |
| At5g19530 | Thermospermine synthase/ACAULIS 5 (ACL5) | 11.6±1.4 | |
| Cell-wall metabolism | At3g25050 | Xyloglucan endotransglycosylase/hyrdolase 3 (XTH3) | 38.5±3.4 |
| At2g22620 | Rhamnogalacturonate lyase | 17.2±5.5 | |
| At1g77790 | Glycosyl hydrolase family 17/Endo-1,3-beta-glucanase | 14.7±2.7 | |
| At5g08370 | Alpha-galactosidase 2 (AGAL2) | 13.5±3.6 | |
| At2g46570 | Laccase 6 (LAC6) | 12.5±2.4 | |
| At3g19620 | Glycosyl hydrolase family 3/Beta-xylosidase A | 10.2±1.4 | |
| At2g46760 | D-arabinono-1,4-lactone oxidase family protein | 7.8±2.2 | |
| At1g56710 | Glycosyl hydrolase family 28/Polygalacturonase | 7.4±1.8 | |
| At3g27400 | Pectate lyase | 7.0±0.6 | |
| At5g51890 | Peroxidase involved in TE lignification | 5.9±0.9 | |
| At2g34790 | FAD-binding domain-containing protein (MEE23/EDA28) | 5.2±1.4 | |
| At5g17420 | Cellulose synthase/IRREGULAR XYLEM 3 (IRX3) | 5.1±0.8 | |
| Proteolysis | At5g22860 | Serine carboxypeptidase S28 | 25.0±2.5 |
| At1g01900 | Subtilisin-like serine protease (SBT1.1) | 9.7±2.4 | |
| At1g20160 | Subtilisin-like serine protease (SBT5.2) | 8.7±0.6 | |
| At2g04160 | Subtilisin-like protease (AIR3) | 6.0±1.3 | |
| At4g35350 | Xylem cysteine endopeptidase 1 (XCP1) | 5.4±0.5 | |
| At1g20850 | Xylem cysteine endopeptidase 2 (XCP2) | 3.9±1.1 | |
| Transcription | At2g18060 | Vascular-related NAC domain protein 1 (VND1) | 16.4±4.0 |
| At4g36160 | Vascular-related NAC domain protein 2 (VND2) | 12.0±1.9 | |
| At5g62380 | Vascular-related NAC domain protein 6 (VND6) | 5.9±0.7 | |
| At4g32880 | Class III homeodomain-leucine zipper protein (ATHB8) | 5.8±1.5 | |
| At1g68810 | Basic helix-loop-helix (bHLH) family protein (TMO5L1) | 5.7±1.8 | |
| At5g64530 | Xylem NAC domain 1 (XND1) | 5.5±1.3 | |
| At1g53160 | Squamosa promoter-binding protein-like 4 (SPL4) | 5.5±2.5 | |
| At1g19850 | Auxin response factor 5/MONOPTEROS (MP/ARF5) | 5.1±2.1 | |
| At5g12870 | Myb protein (MYB46) | 4.7±0.7 | |
| At4g13480 | Myb protein (MYB79) | 4.4±1.0 | |
| At1g71930 | Vascular-related NAC domain protein 7 (VND7) | 4.2±1.4 | |
| At3g25710 | Basic helix-loop-helix (bHLH) family protein (TMO5) | 4.0±0.9 | |
| At2g34710 | Class III homeodomain-leucine zipper protein (PHB) | 3.8±1.3 | |
| At1g52150 | Class III homeodomain-leucine zipper protein (CNA/ATHB15) | 2.8±1.2 | |
| Signal transduction | At5g61480 | Leucine-rich repeat transmembrane kinase (PXY/TDR) | 5.0±1.9 |
| At2g01950 | Leucine-rich repeat transmembrane kinase (BRL2/VH1) | 3.0±1.1 | |
| Hormone-related | At1g77110 | Auxin transport protein/PIN-FORMED 6 (PIN6) | 10.7±2.0 |
| At5g55250 | IAA carboxylmethyltransferase (IAMT1) | 5.7±1.8 | |
| At3g53450 | Cytokinine-activating enzyme/LONELY GUY 4 (LOG4) | 5.0±1.8 | |
| At4g13260 | Flavin-containing monooxygenase/YUCCA2 (YUC2) | 4.8±0.6 | |
| At2g26700 | Protein kinase/PINOID2 (PID2) | 4.0±1.5 | |
| At1g73590 | Auxin transport protein/PIN-FORMED 1 (PIN1) | 3.0±0.7 | |
| Transport | At4g02700 | Sulfate transporter (SULTR3;2) | 6.8±2.2 |
| At1g77380 | Amino acid permease (AAP3) | 4.4±1.0 | |
| At2g21050 | Amino acid permease/LIKE AUXIN RESISTANT 2 (LAX2) | 3.7±1.2 |