Skip to main content
. 2014 Mar 14;5:88. doi: 10.3389/fpls.2014.00088

Table 2.

Hemileia vastatrix transcript homology in databases and KOG functional categories classification.

Library gU Ap Total % of all gU contigs % of all Ap contigs % of all contigs
NCBI nr_blastn 2119 2126 4245 49.66 58.62 53.78
Mlp genome_tblastx 2356 2159 4515 55.21 59.53 57.20
Pgt_genome_tblastx 2294 2099 4393 53.76 57.87 55.65
Pt_genome_tblastx 2410 2171 4581 56.48 59.86 58.03
Pst_genome_tblastx 2408 2159 4567 56.43 59.53 57.85
EST_Pucciniales_tblastx 2507 2334 4841 58.75 64.35 61.33
SwissProt_blastx 1301 1362 2663 30.49 37.55 33.73
PHIbase_tblastx 482 444 926 11.30 12.24 11.73
COGEME_tblastx 2016 2042 4058 47.25 56.30 51.41
KOG 1691 1690 3381 39.63 46.59 42.83
Posttranslational modification, protein turnover, chaperones 12.5 13.6
Translation, ribosomal structure and biogenesis 12.4 19.7
Intracellular trafficking, secretion, and vesicular transport 8.2 5.7
Energy production and conversion 7.9 9.1
Signal transduction mechanisms 7.5 6.3
Lipid transport and metabolism 5.7 6.4

Summary of the number and percentage of hits in homology searches of the H. vastatrix germinated urediniospores (gU) and appressoria (Ap) contig libraries against the NCBI nr database (NCBI nr_blastn), rust genomic and transcriptomic databases (Mlp_genome_tblastx, Pgt_genome_tblastx, Pt_genome_tblastx, Pst_genome_tblastx, EST_Pucciniales_tblastx), the SwissProt database (SwissProt_blastx) and functional databases (PHIbase_tblastx, COGEME_tblastx, KOG).