Table 2.

Settings for first level analysis for the different software packages (for AFNI it is currently not possible to select non-linear registration in the graphical user interface).

	Normalization	Motion	Motion regressors	Smoothing (mm)	Cluster simulation	Modeling of GLM residuals
SPM	Linear + non-linear to MNI template	Yes	Yes, 6	6	Not available	Global AR(1)
FSL	Linear + non-linear to MNI template	Yes	Yes, 6	6	Not available	FILM prewhitening (Woolrich et al., 2001)
AFNI	Linear to MNI template	Yes	Yes, 6	6	No	Voxel-wise ARMA(1, 1)
BROCCOLI	Linear + non-linear to MNI template	Yes	Yes, 6	6	Not available	Voxel-wise AR(4)