Table 4.

A selection of PEM-based algorithms for the detection of Structural Variants.

Program	Author(s)	Website	Detectable Events
PEMer	Korbel J Et, al.	http://sv.gersteinlab.org/pemer/	basic deletion, basic insertion, basic inversion, linking, linked insertion
VariationHunter	Hormozdiari F Et, al.	http://compbio.cs.sfu.ca/strvar.htm	basic deletion, basic insertion, basic inversion, everted duplication
MoDIL	Lee S Et, al.	http://compbio.cs.toronto.edu/modil/	basic deletion, basic insertion
BreakDancer	Chen K Et, al.	The software package is available as supplementary information at Nature Methods Online	basic deletion, basic insertion, basic inversion, hanging insertion