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. 2014 Feb 5;118(9):2366–2376. doi: 10.1021/jp501041m

Table 1. List of the SMDH2 Oligonucleotides Used in This Work.

# full name short name
1 3′-X-5′-C-3′-Y-5′ [5′-C-3′]
2 3′-X′-5′-C-3′-Y′-5′ [5′-C-3′]′
3 3′-X-5′-C-5′-Y-3′ [5′-C-5′]
4 3′-X′-5′-C-5′-Y′-3′ [5′-C-5′]′
5 5′-X-3′-C-3′-Y-5′ [3′-C-3′]
6 5′-X′-3′-C-3′-Y′-5′ [3′-C-3′]′
7 3′-X-5′-T3CT3-3′-Y-5′ [5′-T3CT3-3′]
8 3′-X′-5′-T3CT3-3′-Y′-5′ [5′-T3CT3-3′]′
9 3′-X-5′-T6-3′-Y-5′ [5′-T6-3′]
10 3′-X′-5′-T6-3′-Y′-5′ [5′-T6-3′]′
11 3′-X-5′-T6-5′-Y-3′ [5′-T6-5′]
12 3′-X′-5′-T6-5′-Y′-3′ [5′-T6-5′]′
13 3′-X-5′-T3-3′-Y-5′ [5′-T3-3′]
14 3′-X′-5′-T3-3′-Y′-5′ [5′-T3-3′]′
Sequence X: 3′-ATC CTT ATC AAT ATT-5′
Sequence X′: 5′-TAG GAA TAG TTA TAA-3′
Sequence Y: 3′-TTA TAA CTA TTC CTA-5′
Sequence Y′: 5′-AAT ATT GAT AAG GAT-3′
To maintain similar thermal properties, sequence X is the reverse of Y and sequence X′ is the reverse of Y′.