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. 2014 Mar 14;9(3):e90643. doi: 10.1371/journal.pone.0090643

Table 1. General Genome sequencinga features and annotationb features of L. rhamnosus clinical isolates and L. rhamnosus GG and L. rhamnosus Lc705 genomic features.

Organism Total Reads genome coverage Number of contigsc (>200 bp) Genome size (Mbp) Coding sequences (CDS) rRNA operons tRNA genes GC content (%) Hypothetical proteins (total)
LRHMDP2d 77,329 17 X 51 2.91 2,910 7 56 46.6 815
LRHMDP3 d 75,985 17 X 47 2.91 2,925 6 57 46.6 819
GGe - - - 3.01 2944 5 57 47 734
Lc705e - - - 3.03 2992 5 61 47 760
a

Using Roche GS(FLX+) pyrosequencing.

b

Based on results merged from the RAST (Rapid Annotation using Subsystem Technology) server and tRNAscan-SE.

c

assembled by Newbler Assembler 2.6.

d

Both L.rhamnosus clinical isolates (LRHMDP2 and LRHMDP3) were sourced from infected dental pulps from carious teeth categorised as representing the initial stages of infection of pulp tissue.

e

[13].