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. 2013 Jan 21;15(2):256–278. doi: 10.1093/bib/bbs086

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© The Author 2013. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2: — Venn diagrams showing the number of identified variants for tested germline (A), somatic (B), CNV (C) and exome CNV (D) tools. The depicted numbers in (A) and (B) report identified SNPs and INDELs. Venn diagram (C) shows the overlap between known (cnv_sim) and predicted CNVs. Figure (D) illustrates the overlap between CONTRA and ExomeCNV. The intersection numbers were adjusted to reflect that 10 CNVs detected by CONTRA are located within 3 CNVs reported by ExomeCNV.