Table 1. Overview of sRNA gene deletion mutants and selected features.
sRNA | parent strain | HVO-no. | genomic localisation | size [nt] | RNomics | bioinf. predictions | HTS | phenotypic screening |
sRNA63 | H26 | HVO_B0326s | pHV3 (378513-690/R) | 178 | yes | no | no | yes |
sRNA132 | H26 | HVO_1405s | CHR (1280196-333/R) | 138 | yes | no | yes | yes |
sRNA168 | H26 | HVO_A0133s | pHV4 (131765-909/R) | 145 | yes | no | no | yes |
sRNA194 | H26 | HVO_2011s2 | CHR (1857632-748/R) | 117 | yes | no | yes | yes |
sRNA235 | H26 | HVO_2284s2 | CHR (2148186-335/R) | 200 | yes | no | yes | yes |
sRNA288 | H26 | HVO_B0116s | pHV3 (130470-618/F) | 141 | yes | no | no | yes |
sRNA308 | H26 | HVO_1355s | CHR (1234567-716/R) | 151 | yes | no | yes | yes |
sRNA362 | H119 | HVO_A0137s | pHV4 (135199-340/F) | 143 | yes | no | no | yes |
sRNA450 | H119 | HVO_A0242s | pHV4 (246414-573/F) | 160 | yes | no | no | yes |
sRNA479 | H119 | HVO_A0204s2 | pHV4 (207708-873/F) | 166 | yes | no | no | yes |
sRNA500 | H26/H119 | HVO_1187s | CHR (1080188-342/F) | 155 | yes | yes | yes | yes |
sRNA529 | H119 | HVO_A0126s | pHV4 (124597-744/F) | 149 | yes | no | yes | yes |
sRNAH225.2R | H26 | HVO_1727s2 | CHR (1598008-103/F) | 96 | no | yes | no | yes |
sRNAhtsf182 | H26 | HVO_1456s | CHR (1329307-323/F) | 17 | no | no | yes | yes |
sRNAhtsf209 | H26 | HVO_1724s | CHR (1594231-47/F) | 17 | no | no | yes | yes |
sRNAhtsf242 | H26 | HVO_1933s | CHR (1781298-327/R) | 30 | no | yes | yes | yes |
sRNAhtsf339 | H26 | HVO_2399s | CHR (2268672-88/F) | 17 | no | no | yes | yes |
sRNAhts359 | H26 | HVO_2520s | CHR (2386663-81/R) | 19 | no | no | yes | yes |
sRNAhtsf416 | H26 | HVO_2834s | CHR (2670126-42/F) | 17 | no | yes | yes | yes |
sRNAhtsf467 | H26 | HVO_C0057s | pHV1 (57795-813/F) | 19 | no | no | yes | yes |
sRNAhtsf468 | H26 | HVO_C0057s2 | pHV1 (58689-881/F) | 193 | no | no | yes | yes |
sRNAhtsf494 | H26 | HVO_B0234s | pHV3 (278591-694/R) | 104 | no | no | yes | yes |
sRNAhtsf574 | H26 | HVO_A0638s | pHV4 (635713-733/R) | 21 | no | no | yes | yes |
* sRNAhts4 | H119 | HVO_2019s | CHR (1865357-541/F) | 185 | no | no | yes | yes |
* sRNAhts10 | H119 | HVO_2213s | CHR (2078656-816/F) | 161 | no | yes | yes | yes |
sRNAhts14 | H119 | HVO_0104s | CHR (102869-3017/F) | 149 | no | no | yes | yes |
* sRNAhts21 | H119 | HVO_2583s | CHR (2436224-377/F) | 154 | no | no | yes | yes |
* published in Heyer et al., 2012.