Table 2.
Differentially selected regions between high and low estimated breeding value populations.
| Region | PorcineSNP60 BeadChip Position (Mb) based on Sscrofa 10.2 assembly | Peak SNP (FST) | Top 0.1% | Top 5% | Candidate genes | Birth weight QTL number |
|---|---|---|---|---|---|---|
| 1 | chr.1:163614679..163648076 | ASGA0004841(0.1031) | 2 | 0 | NA | 5232 |
| 2 | chr.4:33947049..34338016 | ALGA0024390(0.1129) | 2 | 6 | NA | 369 |
| ASGA0019178(0.1129) | ||||||
| 3 | chr.5:3829983..5355995 | M1GA0007314(0.1073) | 1 | 10 | NA | NA |
| 4 | chr.5:6836955..7331522 | M1GA0007436(0.1409) | 1 | 3 | TMEM184B | 3189 |
| 5 | chr.6:13486031..13812780 | H3GA0017575(0.1031) | 1 | 4 | NA | NA |
| 6 | chr.6:21038055..21721506 | ALGA0034850(0.1082) | 1 | 7 | NA | NA |
| 7 | chr.6:37040339..37139826 | H3GA0054966(0.1293) | 1 | 2 | NA | NA |
| 8 | chr.6:62369260..64915744 | ASGA0095271(0.1300) | 7 | 31 | TNFRSF9, CA6 | 1012 |
| ALGA0117367(0.1300) | ||||||
| MARC0067004(0.1300) | ||||||
| 9 | chr.7:11223472..11802513 | ASGA0031182(0.1031) | 1 | 1 | NA | NA |
| 10 | chr.7:57441888..58806078 | ALGA0042164(0.0813) | 0 | 12 | CCDC37 | 187, 5197 |
| 11 | chr.8:20367972..21000928 | MARC0112253(0.1268) | 2 | 3 | TBC1D19 | NA |
| 12 | chr.8:93481336..94303744 | MARC0093552(0.1163) | 1 | 1 | NA | NA |
| 13 | chr.8:130415971..131295589 | ASGA0039827(0.1143) | 2 | 3 | ADH4 | NA |
| 14 | chr.8:139592943..139593441 | MARC0054584(0.1163) | 1 | 1 | NA | NA |
| 15 | chr.8:142867557..143732188 | ALGA0050003(0.1282) | 2 | 7 | WDFY3 | NA |
| 16 | chr.9:60085650..61556267 | ASGA0102114(0.1185) | 3 | 10 | NA | NA |
| 17 | chr.9:81214756..82621184 | ALGA0053850(0.1258) | 1 | 3 | LOC100738652 | NA |
| 18 | chr.9:95825746..97051426 | ALGA0054166(0.0857) | 0 | 16 | HDAC9 | NA |
| CASI0007446(0.0857) | ||||||
| ASGA0043971(0.0857) | ||||||
| 19 | chr.14:9010230..10254612 | ALGA0074932(0.1014) | 1 | 10 | NA | NA |
| 20 | chr.18:30963795..31174385 | ALGA0097763(0.1259) | 1 | 1 | NA | NA |
| 21 | chr.18:32516193..33286269 | INRA0055670(0.1420) | 1 | 2 | MDFIC | NA |
| 22 | chr.18:55026817..55614254 | ALGA0098742(0.1204) | 1 | 2 | NA | NA |
| 23 | chr.X:8818096..10005053 | MARC0040504(0.1077) | 1 | 9 | NA | NA |
| 24 | chr.X:15592452..16389800 | ASGA0080878(0.1282) | 2 | 2 | NA | NA |
| 25 | chr.X:19357189..21123895 | H3GA0051592(0.1675) | 1 | 10 | NA | NA |
| 26 | chr.X:39671416..40276593 | ASGA0081063(0.1007) | 5 | 3 | BCOR | NA |
| M1GA0023676(0.1007) | ||||||
| H3GA0051711(0.1007) | ||||||
| H3GA0051713(0.1007) | ||||||
| MARC0069431(0.1007) | ||||||
| 27 | chr.X:136986704..137562054 | MARC0046821(0.1300) | 1 | 1 | NA | NA |
Note: The candidate genes are given within the SNPs of top significant 0.1% or peak SNP for each region.