Table 3.
Top ten enriched metabolic pathways among differentially expressed transcripts.
| Pathway ID | Description | DETa | Referenceb | P-valuec | Q-value |
|---|---|---|---|---|---|
| ko03010 | Ribosome | 49 | 144 | 1.35E-14 | 2.85E-12 |
| ko00620 | Pyruvate metabolism | 21 | 83 | 8.96E-05 | 9.45E-03 |
| ko03050 | Proteasome | 15 | 53 | 0.000239 | 1.68E-02 |
| ko03040 | Spliceosome | 44 | 268 | 0.001539 | 7.15E-02 |
| ko04141 | Protein processing in endoplasmic reticulum | 42 | 254 | 0.001695 | 7.15E-02 |
| ko00280 | Valine, leucine and isoleucine degradation | 15 | 65 | 0.002402 | 8.45E-02 |
| ko00062 | Fatty acid elongation in mitochondria | 6 | 16 | 0.004098 | 1.24E-01 |
| ko04612 | Antigen processing and presentation | 15 | 75 | 0.009839 | 2.60E-01 |
| ko04146 | Peroxisome | 23 | 134 | 0.011384 | 2.67E-01 |
| ko01040 | Biosynthesis of unsaturated fatty acids | 9 | 38 | 0.014408 | 2.67E-01 |
“a”: Differentially expressed transcripts
“b”: Reference sequences were extracted from NCBI (see Materials and Methods for details).
“c”: P-value is calculated based on Hypergeometric Test. Pathways with Q value≤0.05 are significantly enriched in differentially expressed transcripts. Pathway ID can be found in KEGG database.